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This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 230/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Andrea Gobbi
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for BiRewire in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BiRewire package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiRewire |
| Version: 3.43.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire |
| StartedAt: 2026-03-20 17:47:20 -0400 (Fri, 20 Mar 2026) |
| EndedAt: 2026-03-20 17:47:25 -0400 (Fri, 20 Mar 2026) |
| EllapsedTime: 5.2 seconds |
| RetCode: 0 |
| Status: OK |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘BiRewire’ ...
** this is package ‘BiRewire’ version ‘3.43.1’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BiRewire.c -o BiRewire.o
BiRewire.c:149:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
149 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:221:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
221 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:229:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
229 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:280:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
280 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:332:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
332 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:339:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
339 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:402:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
402 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:454:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
454 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:461:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
461 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:588:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
588 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:652:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
652 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:737:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
737 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:844:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
844 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:893:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
893 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:962:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
962 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:1096:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
1096 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:1144:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
1144 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
BiRewire.c:1183:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat]
1183 | Rprintf("DONE in %d seconds \n",-(tin-tfin));
| ~~ ^~~~~~~~~~~
| %ld
18 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c interface.c -o interface.o
interface.c:28:23: warning: variable 'e' set but not used [-Wunused-but-set-variable]
28 | size_t i,dim,nc,nr,j,e=0;
| ^
interface.c:105:68: warning: data argument not used by format string [-Wformat-extra-args]
105 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:900:20: note: expanded from macro 'asInteger'
900 | #define asInteger Rf_asInteger
| ^
interface.c:147:68: warning: data argument not used by format string [-Wformat-extra-args]
147 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:900:20: note: expanded from macro 'asInteger'
900 | #define asInteger Rf_asInteger
| ^
interface.c:167:23: warning: variable 'e' set but not used [-Wunused-but-set-variable]
167 | size_t i,dim,nc,nr,j,e=0;
| ^
interface.c:252:68: warning: data argument not used by format string [-Wformat-extra-args]
252 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:900:20: note: expanded from macro 'asInteger'
900 | #define asInteger Rf_asInteger
| ^
interface.c:296:68: warning: data argument not used by format string [-Wformat-extra-args]
296 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:900:20: note: expanded from macro 'asInteger'
900 | #define asInteger Rf_asInteger
| ^
6 warnings generated.
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-BiRewire/00new/BiRewire/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
Package 'BiRewire' is deprecated and will be removed from Bioconductor
version 3.24
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
Package 'BiRewire' is deprecated and will be removed from Bioconductor
version 3.24
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)