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This page was generated on 2025-01-11 11:46 -0500 (Sat, 11 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4760
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4479
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4443
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4398
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4391
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 243/2277HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenomeForge 1.7.0  (landing page)
Hervé Pagès
Snapshot Date: 2025-01-10 13:40 -0500 (Fri, 10 Jan 2025)
git_url: https://git.bioconductor.org/packages/BSgenomeForge
git_branch: devel
git_last_commit: b850d52
git_last_commit_date: 2024-10-29 11:19:37 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'rtracklayer' which is only available as a source package that needs compilation
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for BSgenomeForge on kunpeng2

To the developers/maintainers of the BSgenomeForge package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenomeForge.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: BSgenomeForge
Version: 1.7.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenomeForge
StartedAt: 2025-01-10 21:38:10 -0000 (Fri, 10 Jan 2025)
EndedAt: 2025-01-10 21:41:02 -0000 (Fri, 10 Jan 2025)
EllapsedTime: 172.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenomeForge
###
##############################################################################
##############################################################################


* checking for file ‘BSgenomeForge/DESCRIPTION’ ... OK
* preparing ‘BSgenomeForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QuickBSgenomeForge.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/729/545/GCA_009729545.1_ASM972954v1/GCA_009729545.1_ASM972954v1_genomic.fna.gz'
Content type 'application/x-gzip' length 649859 bytes (634 KB)
==================================================
downloaded 634 KB

trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/605/GCA_008369605.1_ASM836960v1/GCA_008369605.1_ASM836960v1_genomic.fna.gz'

Quitting from lines 86-90 [unnamed-chunk-4] (QuickBSgenomeForge.Rmd)
Error: processing vignette 'QuickBSgenomeForge.Rmd' failed with diagnostics:
cannot open URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/605/GCA_008369605.1_ASM836960v1/GCA_008369605.1_ASM836960v1_genomic.fna.gz'
--- failed re-building ‘QuickBSgenomeForge.Rmd’

--- re-building ‘AdvancedBSgenomeForge.Rnw’ using Sweave
--- finished re-building ‘AdvancedBSgenomeForge.Rnw’

SUMMARY: processing the following file failed:
  ‘QuickBSgenomeForge.Rmd’

Error: Vignette re-building failed.
Execution halted