Package: rhdf5client

Version: 1.6.1

Command: rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5client.buildbin-libdir rhdf5client_1.6.1.tar.gz

StartedAt: 2019-10-16 10:04:18 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 10:04:46 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 28.0 seconds

RetCode: 0

Status:  OK

PackageFile: rhdf5client_1.6.1.zip

PackageFileSize: 1.068 MiB

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### Running command:
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###   rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5client.buildbin-libdir rhdf5client_1.6.1.tar.gz
###
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install for i386

* installing *source* package 'rhdf5client' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
                                          ^
extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized]
     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
                                                    ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rhdf5client'
    finding HTML links ... done
    H5S_Array-class                         html  
    H5S_Array                               html  
    H5S_ArraySeed-class                     html  
    H5S_Matrix-class                        html  
    H5S_dataset                             html  
    H5S_dataset2                            html  
    H5S_source-class                        html  
    HSDSArray                               html  
    HSDSArraySeed                           html  
    HSDSDataset-class                       html  
    HSDSDataset                             html  
    HSDSFile-class                          html  
    HSDSFile                                html  
    HSDSMatrix                              html  
    HSDSSource-class                        html  
    HSDSSource                              html  
    HSDS_Matrix                             html  
    HSDS_Matrix_OLD                         html  
    URL_h5serv                              html  
    URL_hsds                                html  
    as                                      html  
    dataset                                 html  
    dim-H5S_ArraySeed-method                html  
    dim                                     html  
    dimnames-H5S_ArraySeed-method           html  
    dimnames                                html  
    domains                                 html  
    dsmeta                                  html  
    extract_array                           html  
    fetchDatasets                           html  
    getData-methods                         html  
    getDatasetAttrs                         html  
    getDatasetSlice                         html  
    getDatasetUUIDs                         html  
    getDims                                 html  
    getHRDF                                 html  
    getReq                                  html  
    groups-methods                          html  
    hsdsInfo                                html  
    internalDim                             html  
    links                                   html  
    listDatasets                            html  
    listDomains-methods                     html  
    rhdf5client-deprecated                  html  
    rhdf5client                             html  
    setPath                                 html  
    sproc                                   html  
    sub-H5S_dataset-character-character-ANY-method
                                            html  
    sub-H5S_dataset-numeric-numeric-ANY-method
                                            html  
    sub-HSDSDataset-numeric-ANY-ANY-method
                                            html  
    sub-HSDSDataset-numeric-numeric-ANY-method
                                            html  
    sub-sub                                 html  
    targets                                 html  
    transfermode                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rhdf5client' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
                                          ^
extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized]
     A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
                                                    ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rhdf5client.buildbin-libdir/rhdf5client/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rhdf5client' as rhdf5client_1.6.1.zip
* DONE (rhdf5client)