Supat Thongjuea
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/r3Cseq |
| Branch: RELEASE_3_9 |
| Last Commit: dff8c27 |
| Last Changed Date: 2019-05-02 11:53:32 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:25:48 -0400 (Wed, 16 Oct 2019).
| Package 1302/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| r3Cseq 1.30.0 Supat Thongjuea
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: r3Cseq |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/r3Cseq_1.30.0.tar.gz && rm -rf r3Cseq.buildbin-libdir && mkdir r3Cseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=r3Cseq.buildbin-libdir r3Cseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL r3Cseq_1.30.0.zip && rm r3Cseq_1.30.0.tar.gz r3Cseq_1.30.0.zip |
| StartedAt: 2019-10-15 20:40:49 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:42:14 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 85.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/r3Cseq_1.30.0.tar.gz && rm -rf r3Cseq.buildbin-libdir && mkdir r3Cseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=r3Cseq.buildbin-libdir r3Cseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL r3Cseq_1.30.0.zip && rm r3Cseq_1.30.0.tar.gz r3Cseq_1.30.0.zip
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install for i386
* installing *source* package 'r3Cseq' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
** help
*** installing help indices
converting help for package 'r3Cseq'
finding HTML links ... done
Myb_prom_FB html
Myb_prom_FL html
calculateBatchRPM html
calculateRPM html
contrCoverage html
contrInteractionRegions html
contrRPM html
contrRawData html
contrReadCount html
enzymeDb html
expCoverage html
expInteractionRegions html
expRPM html
expRawData html
expReadCount html
export3Cseq2bedGraph html
export3CseqRawReads2bedGraph html
exportBatchInteractions2text html
exportInteractions2text html
generate3CseqReport html
getBatchInteractions html
finding level-2 HTML links ... done
getBatchRawReads html
getBatchReadCountPerRestrictionFragment
html
getBatchReadCountPerWindow html
getContrInteractionsInRefseq html
getCoverage html
getExpInteractionsInRefseq html
getInteractions html
getRawReads html
getReadCountPerRestrictionFragment html
getReadCountPerWindow html
getViewpoint html
hg18refGene html
hg19refGene html
mm10refGene html
mm9refGene html
plot3Cecdf html
plotDomainogramNearViewpoint html
plotInteractionsNearViewpoint html
plotInteractionsPerChromosome html
plotOverviewInteractions html
r3Cseq-class html
r3CseqCommon-class html
r3CseqInBatch-class html
rn5refGene html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
** testing if installed package can be loaded from final location
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'r3Cseq' ...
** testing if installed package can be loaded
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
* MD5 sums
packaged installation of 'r3Cseq' as r3Cseq_1.30.0.zip
* DONE (r3Cseq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'r3Cseq' successfully unpacked and MD5 sums checked