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BUILD BIN report for cellTree on tokay2

This page was generated on 2019-10-16 12:34:45 -0400 (Wed, 16 Oct 2019).

Package 236/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cellTree 1.14.0
David duVerle
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/cellTree
Branch: RELEASE_3_9
Last Commit: a765f75
Last Changed Date: 2019-05-02 11:53:59 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: cellTree
Version: 1.14.0
Command: rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.14.0.tar.gz
StartedAt: 2019-10-16 08:51:56 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 08:52:25 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 29.6 seconds
RetCode: 0
Status:  OK  
PackageFile: cellTree_1.14.0.zip
PackageFileSize: 1.045 MiB

Command output

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### Running command:
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###   rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.14.0.tar.gz
###
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install for i386

* installing *source* package 'cellTree' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'cellTree'
    finding HTML links ... done
    HSMM_lda_model                          html  
    cell.ordering.table                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/cell.ordering.table.Rd:10: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    cellTree-package                        html  
    compute.backbone.tree                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/compute.backbone.tree.Rd:34: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    compute.go.enrichment                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/compute.go.enrichment.Rd:30: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    compute.lda                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/compute.lda.Rd:25: file link 'LDA-class' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/compute.lda.Rd:69: file link 'LDA' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/compute.lda.Rd:69: file link 'LDA_Gibbscontrol-class' in package 'topicmodels' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/compute.lda.Rd:69: file link 'CTM_VEMcontrol-class' in package 'topicmodels' does not exist and so has been treated as a topic
    ct.plot.go.dag                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/ct.plot.go.dag.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    ct.plot.grouping                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/ct.plot.grouping.Rd:12: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/ct.plot.grouping.Rd:31: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    ct.plot.heatmap                         html  
    ct.plot.topics                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/ct.plot.topics.Rd:12: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpQ5DmJb/R.INSTALL91c59a27ce8/cellTree/man/ct.plot.topics.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    get.cell.dists                          html  
    go.results.to.latex                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cellTree' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'cellTree' as cellTree_1.14.0.zip
* DONE (cellTree)