V. Carey
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MLInterfaces |
| Branch: RELEASE_3_9 |
| Last Commit: 0b08111 |
| Last Changed Date: 2019-10-14 14:55:44 -0400 (Mon, 14 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 11:55:27 -0400 (Wed, 16 Oct 2019).
| Package 1024/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MLInterfaces 1.64.1 V. Carey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MLInterfaces |
| Version: 1.64.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MLInterfaces.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MLInterfaces_1.64.1.tar.gz |
| StartedAt: 2019-10-16 03:16:12 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:19:18 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 186.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MLInterfaces.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MLInterfaces.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MLInterfaces_1.64.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/MLInterfaces.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MLInterfaces/DESCRIPTION’ ... OK * this is package ‘MLInterfaces’ version ‘1.64.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MLInterfaces’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘MASS:::predict.lda’ ‘ada:::predict.ada’ ‘e1071:::predict.svm’ ‘rpart:::predict.rpart’ ‘stats:::plot.hclust’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE hclustWidget :: no visible global function definition for ‘:=’ hclustWidget : : no visible binding for global variable ‘key’ Undefined global functions or variables: := key * checking Rd files ... NOTE prepare_Rd: plspinHcube.Rd:17-19: Dropping empty section \details * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed MLearn-new 16.863 0.987 16.888 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/MLInterfaces.Rcheck/00check.log’ for details.
MLInterfaces.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL MLInterfaces ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘MLInterfaces’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MLInterfaces)
MLInterfaces.Rcheck/tests/runTests.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("MLInterfaces")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
RUNIT TEST PROTOCOL -- Wed Oct 16 03:19:14 2019
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
MLInterfaces RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
6.513 0.225 6.724
MLInterfaces.Rcheck/MLInterfaces-Ex.timings
| name | user | system | elapsed | |
| MLearn-new | 16.863 | 0.987 | 16.888 | |
| RAB | 0.146 | 0.000 | 0.146 | |
| balKfold.xvspec | 0.03 | 0.00 | 0.03 | |
| classifierOutput-class | 1.169 | 0.096 | 1.402 | |
| clusteringOutput-class | 0.001 | 0.000 | 0.001 | |
| confuMat-methods | 1.507 | 0.107 | 0.347 | |
| confuTab | 0.009 | 0.000 | 0.009 | |
| fs.absT | 0.042 | 0.004 | 0.046 | |
| fsHistory | 0.014 | 0.048 | 0.099 | |
| hclustWidget | 0.000 | 0.001 | 0.001 | |
| learnerSchema-class | 0.000 | 0.001 | 0.000 | |
| performance-analytics | 0.005 | 0.000 | 0.006 | |
| planarPlot-methods | 2.513 | 0.181 | 2.545 | |
| plspinHcube | 0.000 | 0.000 | 0.001 | |
| predict.classifierOutput | 4.149 | 0.092 | 4.241 | |
| projectLearnerToGrid | 0.758 | 0.028 | 0.786 | |
| projectedLearner-class | 0.001 | 0.000 | 0.001 | |
| raboostCont-class | 0.001 | 0.000 | 0.002 | |
| varImpStruct-class | 0.656 | 0.020 | 0.675 | |
| xvalLoop | 0.000 | 0.000 | 0.001 | |
| xvalSpec | 0.107 | 0.081 | 0.168 | |