Package: sangerseqR

Version: 1.19.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sangerseqR_1.19.0.tar.gz && rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangerseqR.buildbin-libdir sangerseqR_1.19.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.19.0.zip && rm sangerseqR_1.19.0.tar.gz sangerseqR_1.19.0.zip

StartedAt: 2019-04-08 19:13:51 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:15:05 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 74.7 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sangerseqR_1.19.0.tar.gz && rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangerseqR.buildbin-libdir sangerseqR_1.19.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.19.0.zip && rm sangerseqR_1.19.0.tar.gz sangerseqR_1.19.0.zip
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install for i386

* installing *source* package 'sangerseqR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sangerseqR'
    finding HTML links ... done
    PolyPeakParser                          html  
    abif-class                              html  
    chromatogram                            html  
    makeBaseCalls                           html  
    read.abif                               html  
    read.scf                                html  
    readsangerseq                           html  
    sangerseq-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpkbleKR/R.INSTALL1374228176c6/sangerseqR/man/sangerseq-class.Rd:36: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpkbleKR/R.INSTALL1374228176c6/sangerseqR/man/sangerseq-class.Rd:39: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    sangerseqAccessors                      html  
    finding level-2 HTML links ... done

    sangerseqR-package                      html  
    scf-class                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpkbleKR/R.INSTALL1374228176c6/sangerseqR/man/scf-class.Rd:28: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    setAllelePhase                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sangerseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangerseqR' as sangerseqR_1.19.0.zip
* DONE (sangerseqR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sangerseqR' successfully unpacked and MD5 sums checked