Multiple platform build/check report for BioC 3.9 - BUILD BIN report for matter on tokay2

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### Running command:
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###   rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=matter.buildbin-libdir matter_1.9.10.tar.gz
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install for i386

* installing *source* package 'matter' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c bsearch.cpp -o bsearch.o
bsearch.cpp: In function 'size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = const char*; size_t = unsigned int; SEXP = SEXPREC*]':
bsearch.cpp:51:36: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
   else if ( mid == right && result > 0 )
                                    ^
bsearch.cpp: In function 'size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = double; size_t = unsigned int; SEXP = SEXPREC*]':
bsearch.cpp:133:26: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
   else if ( mid == right && diff > 0 )
                          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c matter.cpp -o matter.o
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = int; index_t = int; size_t = unsigned int]':
matter.cpp:3538:25: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         add<T,T>(x, y, i, atm, 0, count, skip);
                         ^
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = unsigned char; index_t = int; size_t = unsigned int]':
matter.cpp:3538:25: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = double; index_t = int; size_t = unsigned int]':
matter.cpp:3538:25: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.cpp: In function 'double var(MatterIterator<T>&, bool) [with T = double]':
matter.cpp:4273:17: warning: 's_new' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 s_new = s_old + (*x - m_old) * (*x - m_new);
                 ^
matter.cpp:4272:17: warning: 'm_new' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 m_new = m_old + (*x - m_old) / n;
                 ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o matter.dll tmp.def bsearch.o init.o matter.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/matter.buildbin-libdir/00LOCK-matter/00new/matter/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'apply' in package 'matter'
Creating a new generic function for 'scale' in package 'matter'
Creating a new generic function for 'biglm' in package 'matter'
** help
*** installing help indices
  converting help for package 'matter'
    finding HTML links ... done
    apply                                   html  
    finding level-2 HTML links ... done

    biglm                                   html  
    bsearch                                 html  
    checksum                                html  
    combiner-method                         html  
    delayed-ops                             html  
    drle-class                              html  
    keys-method                             html  
    lapply                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCKB2yb/R.INSTALL147039482c8f/matter/man/lapply.Rd:41: file link 'sapply' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpCKB2yb/R.INSTALL147039482c8f/matter/man/lapply.Rd:48: file link 'sapply' in package 'base' does not exist and so has been treated as a topic
    matter-class                            html  
    matter-datatypes                        html  
    matter-utils                            html  
    matter_arr-class                        html  
    matter_df-class                         html  
    matter_fc-class                         html  
    matter_list-class                       html  
    matter_mat-class                        html  
    matter_str-class                        html  
    matter_vec-class                        html  
    prcomp                                  html  
    profmem                                 html  
    rep_vt                                  html  
    scale                                   html  
    sparse_mat-class                        html  
    struct                                  html  
    summary-stats                           html  
    tolerance-method                        html  
    uuid                                    html  
    virtual_mat-class                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'matter' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c bsearch.cpp -o bsearch.o
bsearch.cpp: In function 'size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = const char*; size_t = long long unsigned int; SEXP = SEXPREC*]':
bsearch.cpp:51:36: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
   else if ( mid == right && result > 0 )
                                    ^
bsearch.cpp: In function 'size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = double; size_t = long long unsigned int; SEXP = SEXPREC*]':
bsearch.cpp:133:26: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
   else if ( mid == right && diff > 0 )
                          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c matter.cpp -o matter.o
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = double; index_t = long long int; size_t = long long unsigned int]':
matter.cpp:3538:25: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         add<T,T>(x, y, i, atm, 0, count, skip);
                         ^
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = int; index_t = long long int; size_t = long long unsigned int]':
matter.cpp:3538:25: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.cpp: In member function 'void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = unsigned char; index_t = long long int; size_t = long long unsigned int]':
matter.cpp:3538:25: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.cpp: In function 'double var(MatterIterator<T>&, bool) [with T = double]':
matter.cpp:4273:17: warning: 's_new' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 s_new = s_old + (*x - m_old) * (*x - m_new);
                 ^
matter.cpp:4272:17: warning: 'm_new' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 m_new = m_old + (*x - m_old) / n;
                 ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o matter.dll tmp.def bsearch.o init.o matter.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/matter.buildbin-libdir/matter/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'matter' as matter_1.9.10.zip
* DONE (matter)
BUILD BIN report for matter on tokay2

Summary

Command output
