Package: matter

Version: 1.9.10

Command: rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_1.9.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R matter.buildbin-libdir

StartedAt: 2019-04-09 07:19:12 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 07:20:26 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 74.3 seconds

RetCode: 0

Status:  OK

PackageFile: matter_1.9.10.tgz

PackageFileSize: 3.16 MiB

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### Running command:
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###   rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_1.9.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R matter.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=matter.buildbin-libdir matter_1.9.10.tar.gz'
>>>>>>> 

* installing *source* package ‘matter’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c bsearch.cpp -o bsearch.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c init.cpp -o init.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c matter.cpp -o matter.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fPIC  -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o matter.so bsearch.o init.o matter.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/matter.buildbin-libdir/00LOCK-matter/00new/matter/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘apply’ in package ‘matter’
Creating a new generic function for ‘scale’ in package ‘matter’
Creating a new generic function for ‘biglm’ in package ‘matter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matter)


>>>>>>> 
>>>>>>> FIXING LINKS FOR matter.buildbin-libdir/matter/libs//matter.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "matter.buildbin-libdir/matter/libs//matter.so"