| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:00:08 -0400 (Tue, 09 Apr 2019).
| Package 468/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| easyRNASeq 2.19.2 Nicolas Delhomme
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: easyRNASeq |
| Version: 2.19.2 |
| Command: chmod a+r easyRNASeq -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data easyRNASeq |
| StartedAt: 2019-04-08 21:39:44 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 21:42:16 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 151.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r easyRNASeq -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data easyRNASeq
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* checking for file 'easyRNASeq/DESCRIPTION' ... OK
* preparing 'easyRNASeq':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'simpleRNASeq.Rmd' using rmarkdown
Quitting from lines 21-26 (./Chapters/02-AnnotParam.Rmd)
Quitting from lines NA-40 (./Chapters/02-AnnotParam.Rmd)
Error: processing vignette 'simpleRNASeq.Rmd' failed with diagnostics:
Timeout was reached: Connection time-out
--- failed re-building 'simpleRNASeq.Rmd'
--- re-building 'easyRNASeq.Rnw' using Sweave
--- finished re-building 'easyRNASeq.Rnw'
C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/R CMD Sweave easyRNASeq.Rnw
Output file: easyRNASeq.tex
C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/Rscript -e "tools::texi2pdf('easyRNASeq.tex')"
C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/Rscript -e "rmarkdown::render('simpleRNASeq.Rmd')"
processing file: simpleRNASeq.Rmd
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processing file: ./Chapters/02-AnnotParam.Rmd
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output file: simpleRNASeq.knit.md
"C:/PROGRA˜2/Pandoc/pandoc" +RTS -K512m -RTS simpleRNASeq.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output simpleRNASeq.html --email-obfuscation none --self-contained +RTS -K500m -RTS --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.9-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:bootstrap" --include-in-header "C:\Users\biocbuild\bbs-3.9-bioc\tmpdir\RtmpA5Wt4M\rmarkdown-str2850683234ad.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --filter pandoc-citeproc
Output created: simpleRNASeq.html
SUMMARY: processing the following file failed:
'simpleRNASeq.Rmd'
Error: Vignette re-building failed.
Execution halted