Package: easyRNASeq

Version: 2.19.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data easyRNASeq

StartedAt: 2019-04-08 20:12:05 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:14:13 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 128.0 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data easyRNASeq
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* checking for file ‘easyRNASeq/DESCRIPTION’ ... OK
* preparing ‘easyRNASeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘simpleRNASeq.Rmd’ using rmarkdown
Quitting from lines 21-26 (./Chapters/02-AnnotParam.Rmd) 
Quitting from lines NA-40 (./Chapters/02-AnnotParam.Rmd) 
Error: processing vignette 'simpleRNASeq.Rmd' failed with diagnostics:
Timeout was reached: Operation timed out after 0 milliseconds with 0 out of 0 bytes received
--- failed re-building ‘simpleRNASeq.Rmd’

--- re-building ‘easyRNASeq.Rnw’ using Sweave
--- finished re-building ‘easyRNASeq.Rnw’

/Library/Frameworks/R.framework/Resources/bin/R CMD Sweave easyRNASeq.Rnw
Output file:  easyRNASeq.tex
/Library/Frameworks/R.framework/Resources/bin/Rscript -e "tools::texi2pdf('easyRNASeq.tex')"
/Library/Frameworks/R.framework/Resources/bin/Rscript -e "rmarkdown::render('simpleRNASeq.Rmd')"


processing file: simpleRNASeq.Rmd

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   inline R code fragments


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label: style (with options) 
List of 2
 $ echo   : logi FALSE
 $ results: chr "asis"


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  ordinary text without R code


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label: unnamed-chunk-1 (with options) 
List of 4
 $ message: logi FALSE
 $ warning: logi FALSE
 $ results: chr "hide"
 $ echo   : logi FALSE


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  ordinary text without R code


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label: unnamed-chunk-2 (with options) 
List of 1
 $ child: chr "Chapters/01-Introduction.Rmd"



processing file: ./Chapters/01-Introduction.Rmd

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  ordinary text without R code


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label: library

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  ordinary text without R code



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  ordinary text without R code


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label: unnamed-chunk-3 (with options) 
List of 1
 $ child: chr "Chapters/02-AnnotParam.Rmd"



processing file: ./Chapters/02-AnnotParam.Rmd

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  ordinary text without R code


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label: P trichocarpa annotation
Quitting from lines 21-26 (./Chapters/02-AnnotParam.Rmd) 
Quitting from lines NA-40 (./Chapters/02-AnnotParam.Rmd) 
Error in curl_download(url = paste0("ftp://ftp.plantgenie.org/Data/PopGenIE/",  : 
  Timeout was reached: Operation timed out after 0 milliseconds with 0 out of 0 bytes received
Calls: <Anonymous> ... withCallingHandlers -> withVisible -> eval -> eval -> curl_download


Execution halted
make: *** [html] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted