Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:06:13 -0400 (Tue, 09 Apr 2019).
Package 1663/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
UniProt.ws 2.23.0 Marc Carlson
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: UniProt.ws |
Version: 2.23.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:UniProt.ws.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings UniProt.ws_2.23.0.tar.gz |
StartedAt: 2019-04-09 06:11:45 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 06:16:57 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 312.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: UniProt.ws.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:UniProt.ws.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings UniProt.ws_2.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/UniProt.ws.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘UniProt.ws/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘UniProt.ws’ version ‘2.23.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘UniProt.ws’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed UniProtWS-class 2.373 0.236 69.338 colsAndKeytypes 0.440 0.074 35.749 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘UniProt.ws_unit_tests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
UniProt.ws.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL UniProt.ws ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘UniProt.ws’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UniProt.ws)
UniProt.ws.Rcheck/tests/UniProt.ws_unit_tests.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("UniProt.ws") Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colMeans, colSums, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Getting mapping data for P31946 ... and UNIGENE_ID Getting mapping data for P31946 ... and PDB_ID Getting extra data for P31946, P62258, Q04917 'select()' returned 1:many mapping between keys and columns Getting mapping data for 1 ... and ACC Getting mapping data for P04217 ... and UNIGENE_ID Getting mapping data for P04217 ... and PDB_ID Getting extra data for P04217, V9HWD8, P01023... (8 total) 'select()' returned 1:many mapping between keys and columns Getting extra data for P31946, P62258, Q04917 'select()' returned 1:1 mapping between keys and columns Getting mapping data for 1 ... and ACC Getting mapping data for P04217 ... and PDB_ID Getting extra data for P04217, V9HWD8, P01023... (8 total) 'select()' returned 1:many mapping between keys and columns Getting extra data for V9JGI4, Q7GXW8, A0A024RBV9... (400 total) Getting extra data for B4DVF8, H0YH90, Q99809... (400 total) Getting extra data for J3KS96, A0A0S2A4T3, C7B389... (200 total) 'select()' returned 1:1 mapping between keys and columns Getting extra data for P04217, P30443 Getting extra data for P13368, P20806, Q9UM73... (5 total) Getting extra data for P13368, P20806, Q9UM73... (5 total) Getting mapping data for P13368 ... and P_REFSEQ_AC Getting mapping data for 1 ... and ACC Getting mapping data for P04217 ... and UNIGENE_ID RUNIT TEST PROTOCOL -- Tue Apr 9 06:16:51 2019 *********************************************** Number of test functions: 20 Number of errors: 0 Number of failures: 0 1 Test Suite : UniProt.ws RUnit Tests - 20 test functions, 0 errors, 0 failures Number of test functions: 20 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 8.464 0.874 84.451
UniProt.ws.Rcheck/UniProt.ws-Ex.timings
name | user | system | elapsed | |
UniProtWS-class | 2.373 | 0.236 | 69.338 | |
colsAndKeytypes | 0.440 | 0.074 | 35.749 | |
utilities | 1.475 | 0.082 | 1.854 | |