Michael Skinnider
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/PrInCE |
| Branch: master |
| Last Commit: 017fd69 |
| Last Changed Date: 2019-03-12 19:10:59 -0400 (Tue, 12 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:39:22 -0400 (Tue, 09 Apr 2019).
| Package 1223/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PrInCE 0.99.13 Michael Skinnider
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
| Package: PrInCE |
| Version: 0.99.13 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrInCE_0.99.13.tar.gz |
| StartedAt: 2019-04-09 02:59:44 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 03:03:20 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 216.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrInCE.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrInCE_0.99.13.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/PrInCE.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrInCE/DESCRIPTION’ ... OK
* this is package ‘PrInCE’ version ‘0.99.13’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrInCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
calculate_precision 6.831 0.384 7.239
predict_ensemble 6.492 0.379 6.897
PrInCE 6.471 0.380 6.866
predict_interactions 6.333 0.354 6.702
threshold_precision 5.127 0.315 5.461
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrInCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PrInCE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘PrInCE’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: PrInCE *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (PrInCE)
PrInCE.Rcheck/PrInCE-Ex.timings
| name | user | system | elapsed | |
| PrInCE | 6.471 | 0.380 | 6.866 | |
| adjacency_matrix_from_data_frame | 0.002 | 0.000 | 0.002 | |
| adjacency_matrix_from_list | 1.275 | 0.028 | 1.308 | |
| build_gaussians | 0.771 | 0.040 | 0.813 | |
| calculate_precision | 6.831 | 0.384 | 7.239 | |
| check_gaussians | 0.153 | 0.003 | 0.156 | |
| choose_gaussians | 0.259 | 0.003 | 0.263 | |
| clean_profile | 0.068 | 0.001 | 0.070 | |
| clean_profiles | 0.057 | 0.002 | 0.059 | |
| co_apex | 0.163 | 0.002 | 0.166 | |
| detect_complexes | 0.169 | 0.003 | 0.173 | |
| filter_profiles | 0.435 | 0.027 | 0.464 | |
| fit_curve | 0.231 | 0.004 | 0.236 | |
| fit_gaussians | 0.248 | 0.004 | 0.251 | |
| impute_neighbors | 0.060 | 0.001 | 0.062 | |
| is_unweighted | 1.466 | 0.026 | 1.501 | |
| is_weighted | 1.459 | 0.009 | 1.474 | |
| make_initial_conditions | 0.058 | 0.001 | 0.059 | |
| make_labels | 1.344 | 0.006 | 1.352 | |
| match_matrix_dimensions | 1.956 | 0.005 | 1.967 | |
| predict_ensemble | 6.492 | 0.379 | 6.897 | |
| predict_interactions | 6.333 | 0.354 | 6.702 | |
| threshold_precision | 5.127 | 0.315 | 5.461 | |