Hamed Haselimashhadi
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/PhenStat |
| Branch: master |
| Last Commit: 0c62560 |
| Last Changed Date: 2019-04-04 05:49:29 -0400 (Thu, 04 Apr 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:15:19 -0400 (Tue, 09 Apr 2019).
| Package 1182/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PhenStat 2.19.0 Hamed Haselimashhadi
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: PhenStat |
| Version: 2.19.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PhenStat_2.19.0.tar.gz && rm -rf PhenStat.buildbin-libdir && mkdir PhenStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhenStat.buildbin-libdir PhenStat_2.19.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PhenStat_2.19.0.zip && rm PhenStat_2.19.0.tar.gz PhenStat_2.19.0.zip |
| StartedAt: 2019-04-08 20:07:10 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:09:31 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 140.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PhenStat_2.19.0.tar.gz && rm -rf PhenStat.buildbin-libdir && mkdir PhenStat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhenStat.buildbin-libdir PhenStat_2.19.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PhenStat_2.19.0.zip && rm PhenStat_2.19.0.tar.gz PhenStat_2.19.0.zip
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install for i386
* installing *source* package 'PhenStat' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PhenStat'
finding HTML links ... done
FisherExactTest html
JSONOutput html
LRDataset html
LargeDataObject-class html
PhenList-class html
PhenList html
PhenStatReport html
PhenTestResult-class html
PhenTestResult html
RRTest html
TFDataset html
analysedDataset html
analysedDatasetPhenList html
analysedSubset html
analysisResults html
batchIn html
boxplotResidualBatch html
boxplotSexGenotype html
boxplotSexGenotypeBatch html
boxplotSexGenotypeBatchAdjusted html
boxplotSexGenotypeResult html
boxplotSexGenotypeWeightBatchAdjusted html
categoricalBarplot html
checkDataset html
classificationTag html
columnChecks html
columnLevels html
comparison html
dataset html
determiningLambda html
dim html
finalLRModel html
finalModel html
finalTFModel html
formulaDeterminingLambda html
generateGraphs html
getColumn html
getColumnBatchAdjusted html
getColumnView html
getColumnWeightBatchAdjusted html
getCountMatrices html
getDataset html
getGenotypeEffect html
getMatrix html
getPercentageMatrix html
getStat html
getVariable html
getVariables html
hemiGenotype html
htest-class html
htestPhenStat-class html
matrixCount html
method html
methodText html
modelFormula html
modelFormulaLR html
multipleBatches html
noSexes html
parameters html
parserOutputSummary html
parserOutputSummaryLR html
parserOutputTFSummary html
performReverseTransformation html
performTransformation html
plot.PhenList html
plot.PhenTestResult html
plotResidualPredicted html
printLROutput html
printTabStyle html
pvalue html
qqplotGenotype html
qqplotRandomEffects html
qqplotRotatedResiduals html
recommendMethod html
refGenotype html
scatterplotGenotypeWeight html
scatterplotGenotypeWeightResult html
scatterplotSexGenotypeBatch html
scatterplotSexGenotypeBatchResult html
setBatch html
setGenotype html
setMissingValue html
setSex html
setWeight html
startLRModel html
startModel html
startTFModel html
subsetText html
summaryOutput html
summaryPhenListResult html
testDataset html
testFinalLRModel html
testFinalModel html
testGenotype html
transformation html
transformationJSON html
transformationText html
vectorOutput html
vectorOutputMatrices html
weightIn html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PhenStat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhenStat' as PhenStat_2.19.0.zip
* DONE (PhenStat)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'PhenStat' successfully unpacked and MD5 sums checked