| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:27:08 -0400 (Tue, 09 Apr 2019).
| Package 1178/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PharmacoGx 1.13.0 Benjamin Haibe-Kains
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | [ ERROR ] | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | ERROR | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: PharmacoGx |
| Version: 1.13.0 |
| Command: chmod a+r PharmacoGx -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PharmacoGx |
| StartedAt: 2019-04-08 23:34:32 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 23:35:55 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 83.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: PharmacoGx_1.13.0.tar.gz |
| PackageFileSize: 4.02 MiB |
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### Running command:
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### chmod a+r PharmacoGx -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PharmacoGx
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* checking for file 'PharmacoGx/DESCRIPTION' ... OK
* preparing 'PharmacoGx':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
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* installing *source* package 'PharmacoGx' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PharmacoGx'
finding HTML links ... done
CCLEsmall html
CMAPsmall html
GDSCsmall html
HDAC_genes html
LogLogisticRegression html
PharmacoSet-class html
PharmacoSet html
amcc html
availablePSets html
cellInfo-set html
cellInfo html
cellNames-set html
cellNames html
checkPSetStructure html
computeABC html
computeAUC html
computeAmax html
computeICn html
computeSlope html
connectivityScore html
cosinePerm html
dateCreated html
dim-PharmacoSet-method html
downloadPSet html
downloadPertSig html
drugDoseResponseCurve html
drugInfo-set html
drugInfo html
drugNames-set html
drugNames html
drugPerturbationSig html
drugSensitivitySig html
fNames html
featureInfo-set html
featureInfo html
filterNoisyCurves html
gwc html
intersectList html
intersectPSet html
mDataNames html
mcc html
molecularProfiles-set html
molecularProfiles html
pSetName html
pertNumber-set html
pertNumber html
phenoInfo-set html
phenoInfo html
sensNumber-set html
sensNumber html
sensitivityInfo-set html
sensitivityInfo html
sensitivityMeasures html
sensitivityProfiles-set html
sensitivityProfiles html
show-PharmacoSet-method html
show-PharmacoSig-method html
showSigAnnot html
sub-PharmacoSet-ANY-ANY-ANY-method html
subsetTo html
summarizeMolecularProfiles html
summarizeSensitivityProfiles html
symSetDiffList html
unionList html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use '--no-staged-install'
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpWOvBuf/Rinstf7c31de6833/PharmacoGx'
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ERROR: package installation failed