Stefano de Pretis
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: master |
| Last Commit: 246b5c1 |
| Last Changed Date: 2019-02-18 11:41:23 -0400 (Mon, 18 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:14:25 -0400 (Tue, 09 Apr 2019).
| Package 802/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.13.15 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: INSPEcT |
| Version: 1.13.15 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings INSPEcT_1.13.15.tar.gz |
| StartedAt: 2019-04-09 02:52:20 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 03:15:29 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 1389.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings INSPEcT_1.13.15.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/INSPEcT.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘INSPEcT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INSPEcT’ version ‘1.13.15’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INSPEcT’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 258.559 1.907 261.353
makeSimDataset 128.085 18.814 124.043
plotMA 78.981 44.751 51.569
compareSteady 77.994 45.396 50.786
INSPEcT_diffsteady-class 78.698 44.408 51.126
quantifyExpressionsFromBAMs 65.870 27.789 95.787
rocThresholds 79.548 0.292 81.525
rocCurve 69.272 0.324 70.006
makeSimModel 64.288 0.651 64.939
newINSPEcT 41.766 14.245 25.284
processingDelay 29.498 9.148 28.504
quantifyExpressionsFromTrCounts 24.792 0.246 25.039
compareSteadyNoNascent 10.051 0.590 10.643
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
| name | user | system | elapsed | |
| AIC-INSPEcT-method | 0.196 | 0.018 | 0.216 | |
| Extract | 0.504 | 0.003 | 0.506 | |
| INSPEcT-shinyApps | 0.000 | 0.001 | 0.000 | |
| INSPEcT_diffsteady-class | 78.698 | 44.408 | 51.126 | |
| chisqmodel | 0.475 | 0.264 | 0.738 | |
| chisqtest | 0.218 | 0.010 | 0.228 | |
| combine | 0.975 | 0.103 | 1.079 | |
| compareSteady | 77.994 | 45.396 | 50.786 | |
| compareSteadyNoNascent | 10.051 | 0.590 | 10.643 | |
| geneClass | 0.324 | 0.021 | 0.345 | |
| getModel | 0.240 | 0.011 | 0.250 | |
| inHeatmap | 0.330 | 0.012 | 0.343 | |
| labeledSF | 0.280 | 0.007 | 0.286 | |
| logLik | 0.257 | 0.002 | 0.260 | |
| makeModelRates | 1.806 | 0.069 | 1.881 | |
| makeSimDataset | 128.085 | 18.814 | 124.043 | |
| makeSimModel | 64.288 | 0.651 | 64.939 | |
| modelRates | 258.559 | 1.907 | 261.353 | |
| modelSelection | 0.445 | 0.011 | 0.456 | |
| modelingParams | 0.477 | 0.017 | 0.493 | |
| nGenes | 0.258 | 0.010 | 0.268 | |
| nTpts | 0.242 | 0.009 | 0.252 | |
| newINSPEcT | 41.766 | 14.245 | 25.284 | |
| plotGene | 0.376 | 0.057 | 0.433 | |
| plotMA | 78.981 | 44.751 | 51.569 | |
| processingDelay | 29.498 | 9.148 | 28.504 | |
| quantifyExpressionsFromBAMs | 65.870 | 27.789 | 95.787 | |
| quantifyExpressionsFromTrCounts | 24.792 | 0.246 | 25.039 | |
| ratePvals | 0.348 | 0.025 | 0.373 | |
| ratesFirstGuess | 0.224 | 0.013 | 0.236 | |
| ratesFirstGuessVar | 0.155 | 0.010 | 0.164 | |
| removeModel | 0.214 | 0.007 | 0.221 | |
| rocCurve | 69.272 | 0.324 | 70.006 | |
| rocThresholds | 79.548 | 0.292 | 81.525 | |
| split | 0.273 | 0.015 | 0.288 | |
| tpts | 0.215 | 0.008 | 0.223 | |
| viewModelRates | 0.195 | 0.008 | 0.204 | |