Hervé Pagès
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/HDF5Array |
| Branch: master |
| Last Commit: 0065e76 |
| Last Changed Date: 2019-03-28 11:54:33 -0400 (Thu, 28 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:32:51 -0400 (Tue, 09 Apr 2019).
| Package 732/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HDF5Array 1.11.11 Hervé Pagès
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
| Package: HDF5Array |
| Version: 1.11.11 |
| Command: rm -rf HDF5Array.buildbin-libdir && mkdir HDF5Array.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HDF5Array_1.11.11.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HDF5Array.buildbin-libdir |
| StartedAt: 2019-04-09 05:33:24 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:34:40 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 76.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: HDF5Array_1.11.11.tgz |
| PackageFileSize: 9.404 MiB |
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### Running command:
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### rm -rf HDF5Array.buildbin-libdir && mkdir HDF5Array.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HDF5Array_1.11.11.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HDF5Array.buildbin-libdir
###
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HDF5Array.buildbin-libdir HDF5Array_1.11.11.tar.gz'
>>>>>>>
* installing *source* package ‘HDF5Array’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/include" -I/usr/local/include -fPIC -Wall -g -O2 -c DSet.c -o DSet.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/include" -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_HDF5Array.c -o R_init_HDF5Array.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/include" -I/usr/local/include -fPIC -Wall -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/include" -I/usr/local/include -fPIC -Wall -g -O2 -c array_selection.c -o array_selection.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/include" -I/usr/local/include -fPIC -Wall -g -O2 -c h5mread.c -o h5mread.o
h5mread.c:1188:22: warning: unused function 'select_elements_from_chunk' [-Wunused-function]
static long long int select_elements_from_chunk(const DSet *dset,
^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HDF5Array.so DSet.o R_init_HDF5Array.o S4Vectors_stubs.o array_selection.o h5mread.o /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/lib/libhdf5.a /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhdf5lib/lib/libsz.a -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/HDF5Array.buildbin-libdir/HDF5Array/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (HDF5Array)
>>>>>>>
>>>>>>> FIXING LINKS FOR HDF5Array.buildbin-libdir/HDF5Array/libs//HDF5Array.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "HDF5Array.buildbin-libdir/HDF5Array/libs//HDF5Array.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "HDF5Array.buildbin-libdir/HDF5Array/libs//HDF5Array.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "HDF5Array.buildbin-libdir/HDF5Array/libs//HDF5Array.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "HDF5Array.buildbin-libdir/HDF5Array/libs//HDF5Array.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "HDF5Array.buildbin-libdir/HDF5Array/libs//HDF5Array.so"