Package: DepecheR

Version: 0.99.31

Command: rm -rf DepecheR.buildbin-libdir && mkdir DepecheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DepecheR.buildbin-libdir DepecheR_0.99.31.tar.gz

StartedAt: 2019-04-09 07:46:36 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 07:47:40 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 63.8 seconds

RetCode: 0

Status:  OK

PackageFile: DepecheR_0.99.31.zip

PackageFileSize: 2.824 MiB

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### Running command:
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###   rm -rf DepecheR.buildbin-libdir && mkdir DepecheR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DepecheR.buildbin-libdir DepecheR_0.99.31.tar.gz
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install for i386

* installing *source* package 'DepecheR' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c Clusterer.cpp -o Clusterer.o
Clusterer.cpp: In member function 'double Clusterer::cluster_norm(const RowMatrixXd&, const RowMatrixXd&, Eigen::VectorXi, double)':
Clusterer.cpp:204:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(unsigned int i = 0; i<centers.cols(); i++){
                              ^
Clusterer.cpp:205:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(unsigned int j = 0; j<centers.rows(); j++){
                                  ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c InterfaceUtils.cpp -o InterfaceUtils.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
if test -e "/usr/bin/strip" & test -e "/bin/uname" & [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
[[: not found
rm *.o
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DepecheR.buildbin-libdir/00LOCK-DepecheR/00new/DepecheR/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DepecheR'
    finding HTML links ... done
    DepecheR-package                        html  
    dAllocate                               html  
    dColorPlot                              html  
    dColorPlotBP                            html  
    dColorVector                            html  
    dContours                               html  
    dDensityPlot                            html  
    dResidualPlot                           html  
    dScale                                  html  
    dSplsda                                 html  
    dViolins                                html  
    dWilcox                                 html  
    depeche                                 html  
    testData                                html  
    testDataDepeche                         html  
    testDataSNE                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DepecheR' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c Clusterer.cpp -o Clusterer.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c InterfaceUtils.cpp -o InterfaceUtils.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I../inst/include -pthread -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
if test -e "/usr/bin/strip" & test -e "/bin/uname" & [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
[[: not found
rm *.o
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DepecheR.buildbin-libdir/DepecheR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DepecheR' as DepecheR_0.99.31.zip
* DONE (DepecheR)