Jitao David Zhang
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/BioQC |
| Branch: master |
| Last Commit: 2ebe9fc |
| Last Changed Date: 2019-01-07 07:44:18 -0400 (Mon, 07 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:32:26 -0400 (Tue, 09 Apr 2019).
| Package 163/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BioQC 1.11.1 Jitao David Zhang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
| Package: BioQC |
| Version: 1.11.1 |
| Command: rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BioQC_1.11.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BioQC.buildbin-libdir |
| StartedAt: 2019-04-09 04:50:09 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 04:51:27 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 78.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BioQC_1.11.1.tgz |
| PackageFileSize: 321.6 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BioQC_1.11.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BioQC.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BioQC.buildbin-libdir BioQC_1.11.1.tar.gz' >>>>>>> * installing *source* package ‘BioQC’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fPIC -Wall -g -O2 -c gini.c -o gini.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fPIC -Wall -g -O2 -c read_gmt.cpp -o read_gmt.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fPIC -Wall -g -O2 -c stat_rank.c -o stat_rank.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I/usr/local/include -fPIC -Wall -g -O2 -c wmw_test.c -o wmw_test.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/BioQC.buildbin-libdir/BioQC/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help Warning: /private/tmp/RtmpJYetXp/R.INSTALLb6772cc21e78/BioQC/man/IndexList.Rd:6: All text must be in a section Warning: /private/tmp/RtmpJYetXp/R.INSTALLb6772cc21e78/BioQC/man/IndexList.Rd:7: All text must be in a section Warning: /private/tmp/RtmpJYetXp/R.INSTALLb6772cc21e78/BioQC/man/IndexList.Rd:9: All text must be in a section *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BioQC) >>>>>>> >>>>>>> FIXING LINKS FOR BioQC.buildbin-libdir/BioQC/libs//BioQC.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"