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INSTALL report for ExpressionNormalizationWorkflow on tokay1

This page was generated on 2019-01-30 16:00:24 -0500 (Wed, 30 Jan 2019).

Package 8/23HostnameOS / ArchINSTALLBUILD
ExpressionNormalizationWorkflow 1.6.1
Karthikeyan Murugesan
Snapshot Date: 2019-01-30 07:45:05 -0500 (Wed, 30 Jan 2019)
URL: https://git.bioconductor.org/packages/ExpressionNormalizationWorkflow
Branch: RELEASE_3_8
Last Commit: a9f84db
Last Changed Date: 2019-01-08 11:01:29 -0500 (Tue, 08 Jan 2019)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK 

Summary

Package: ExpressionNormalizationWorkflow
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/workflows/src/contrib/ExpressionNormalizationWorkflow_1.6.1.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.6.1.zip && rm ExpressionNormalizationWorkflow_1.6.1.tar.gz ExpressionNormalizationWorkflow_1.6.1.zip
StartedAt: 2019-01-30 07:57:39 -0500 (Wed, 30 Jan 2019)
EndedAt: 2019-01-30 07:59:23 -0500 (Wed, 30 Jan 2019)
EllapsedTime: 102.7 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/workflows/src/contrib/ExpressionNormalizationWorkflow_1.6.1.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.6.1.zip && rm ExpressionNormalizationWorkflow_1.6.1.tar.gz ExpressionNormalizationWorkflow_1.6.1.zip
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install for i386

* installing *source* package 'ExpressionNormalizationWorkflow' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
** help
Warning: C:/Users/biocbuild/bbs-3.8-workflows/tmpdir/Rtmp2510tS/R.INSTALL2828145e203/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:29: All text must be in a section
Warning: C:/Users/biocbuild/bbs-3.8-workflows/tmpdir/Rtmp2510tS/R.INSTALL2828145e203/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:30: All text must be in a section
*** installing help indices
  converting help for package 'ExpressionNormalizationWorkflow'
    finding HTML links ... done
    ExpressionNormalizationWorkflow-package
                                            html  
    conTocat                                html  
    expSetobj                               html  
    pvcAnaly                                html  
    finding level-2 HTML links ... done

    snmAnaly                                html  
    surVarAnaly                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
In R CMD INSTALL

install for x64

* installing *source* package 'ExpressionNormalizationWorkflow' ...
** testing if installed package can be loaded
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
* MD5 sums
packaged installation of 'ExpressionNormalizationWorkflow' as ExpressionNormalizationWorkflow_1.6.1.zip
* DONE (ExpressionNormalizationWorkflow)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'ExpressionNormalizationWorkflow' successfully unpacked and MD5 sums checked
In R CMD INSTALL