Package: DelayedArray

Version: 0.8.0

Command: rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DelayedArray_0.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DelayedArray.buildbin-libdir

StartedAt: 2019-04-16 03:56:15 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 03:57:08 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 52.7 seconds

RetCode: 0

Status:  OK

PackageFile: DelayedArray_0.8.0.tgz

PackageFileSize: 1.482 MiB

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### Running command:
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###   rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DelayedArray_0.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DelayedArray.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DelayedArray.buildbin-libdir DelayedArray_0.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘DelayedArray’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_DelayedArray.c -o R_init_DelayedArray.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c abind.c -o abind.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘aperm’ in package ‘DelayedArray’
in method for ‘coerce’ with signature ‘"dgCMatrix","SparseArraySeed"’: no definition for class “dgCMatrix”
in method for ‘coerce’ with signature ‘"SparseArraySeed","dgCMatrix"’: no definition for class “dgCMatrix”
in method for ‘coerce’ with signature ‘"SparseArraySeed","sparseMatrix"’: no definition for class “sparseMatrix”
in method for ‘coerce’ with signature ‘"DelayedMatrix","dgCMatrix"’: no definition for class “dgCMatrix”
in method for ‘coerce’ with signature ‘"DelayedMatrix","sparseMatrix"’: no definition for class “sparseMatrix”
Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’
Creating a new generic function for ‘apply’ in package ‘DelayedArray’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’
Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’
Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’
Creating a new generic function for ‘colMins’ in package ‘DelayedArray’
Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’
Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DelayedArray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DelayedArray.buildbin-libdir/DelayedArray/libs//DelayedArray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs//DelayedArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs//DelayedArray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs//DelayedArray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs//DelayedArray.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs//DelayedArray.so"