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CHECK report for BiocParallel on tokay1

This page was generated on 2019-04-13 11:22:29 -0400 (Sat, 13 Apr 2019).

Package 142/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocParallel 1.16.6
Bioconductor Package Maintainer
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/BiocParallel
Branch: RELEASE_3_8
Last Commit: 7f7a54c
Last Changed Date: 2019-02-08 09:10:39 -0400 (Fri, 08 Feb 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: BiocParallel
Version: 1.16.6
Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BiocParallel.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings BiocParallel_1.16.6.tar.gz
StartedAt: 2019-04-13 00:47:24 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 01:01:54 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 869.6 seconds
RetCode: 0
Status:  OK  
CheckDir: BiocParallel.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BiocParallel.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings BiocParallel_1.16.6.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/BiocParallel.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocParallel/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BiocParallel' version '1.16.6'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocParallel' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'BatchJobs:::checkDir' 'parallel:::closeNode' 'parallel:::recvData'
  'parallel:::recvOneData' 'parallel:::sendData'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.8-bioc/R/library/BiocParallel/libs/i386/BiocParallel.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
bpaggregate           5.84   0.41   13.37
BatchtoolsParam-class 0.50   0.03   19.76
bpvec                 0.50   0.02    5.55
register              0.03   0.03    5.17
bpok                  0.04   0.01    9.68
ipcmutex              0.01   0.03   13.24
bptry                 0.03   0.00    6.16
bplapply              0.02   0.00    5.47
bpvectorize           0.02   0.00    5.31
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
bpaggregate           6.27   0.17   12.55
BatchtoolsParam-class 0.51   0.05   17.36
bpvec                 0.56   0.00    5.24
bpok                  0.06   0.01   10.10
bptry                 0.01   0.04    8.75
bpvectorize           0.04   0.01    6.20
register              0.02   0.02    6.75
bplapply              0.03   0.00    5.04
ipcmutex              0.01   0.02   13.02
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test.R'
 OK
** running tests for arch 'x64' ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.8-bioc/meat/BiocParallel.Rcheck/00check.log'
for details.

Installation output

BiocParallel.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/BiocParallel_1.16.6.tar.gz && rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocParallel.buildbin-libdir BiocParallel_1.16.6.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL BiocParallel_1.16.6.zip && rm BiocParallel_1.16.6.tar.gz BiocParallel_1.16.6.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  114k  100  114k    0     0  3626k      0 --:--:-- --:--:-- --:--:-- 4084k

install for i386

* installing *source* package 'BiocParallel' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ipcmutex.cpp -o ipcmutex.o
In file included from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/seed_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/mersenne_twister.hpp:30,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:17,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:89: note: #pragma message: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead.
 BOOST_HEADER_DEPRECATED("<boost/integer/integer_log2.hpp>");
                                                                                         ^
In file included from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/map.hpp:30:0,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:37,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/managed_open_or_create_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:26,
                 from ipcmutex.cpp:13:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator*() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >&]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator->() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:220:41:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast<T*>(this->m_storage.data);   }
                                                        ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator*() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>&]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator->() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:192:20:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::˜tree_node() [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:394:7:   required from 'static void boost::container::allocator_traits<Allocator>::priv_destroy(boost::move_detail::false_type, Allocator&, T*) [with T = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; boost::move_detail::false_type = boost::move_detail::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:322:48:   required from 'static void boost::container::allocator_traits<Allocator>::destroy(Allocator&, T*) [with T = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/destroyers.hpp:155:77:   required from 'boost::container::dtl::scoped_destroy_deallocator<Allocator>::˜scoped_destroy_deallocator() [with Allocator = boost::container::new_allocator<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:947:88:   required from 'boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_unique_commit(MovableConvertible&&, boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_commit_data&) [with MovableConvertible = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_commit_data = boost::intrusive::insert_commit_data_t<boost::intrusive::compact_rbtree_node<void*>*>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:960:20:   required from 'std::pair<boost::container::dtl::iterator_from_iiterator<typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator, false>, bool> boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_unique(MovableConvertible&&) [with MovableConvertible = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/map.hpp:735:55:   required from 'std::pair<typename boost::container::dtl::tree<std::pair<const Key, T>, boost::container::dtl::select1st<Key>, Compare, Allocator, Options>::iterator, bool> boost::container::map<Key, T, Compare, Allocator, Options>::insert(boost::container::map<Key, T, Compare, Allocator, Options>::value_type&&) [with Key = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; T = boost::interprocess::ipcdetail::ref_count_ptr; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::tree<std::pair<const Key, T>, boost::container::dtl::select1st<Key>, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; boost::container::map<Key, T, Compare, Allocator, Options>::value_type = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:203:99:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:172:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  reinterpret_cast<internal_type*>(this->m_storage.data)->˜internal_type();  }
       ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() const [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_from(const boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>&) [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:464:60:   required from 'bool boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::operator()(const key_type&, const U&) const [with U = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:180:44:   required from 'Ret boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::operator()(const U&, const key_type&, typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type*) const [with U = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; ValuePtr = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::key_type = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type = void]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:110:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value) && boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type) const [with T1 = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; T2 = boost::intrusive::compact_rbtree_node<void*>*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value) && boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:755:38:   required from 'static boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr boost::intrusive::bstree_algorithms<NodeTraits>::find(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits<void*, true>; boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr = boost::intrusive::compact_rbtree_node<void*>*; boost::intrusive::bstree_algorithms<NodeTraits>::const_node_ptr = const boost::intrusive::compact_rbtree_node<void*>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:383:83:   required from 'boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::find(const KeyType&, KeyTypeKeyCompare) [with KeyType = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>*, std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1301:72:   required from 'boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::find(const key_type&) [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::key_type = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:190:70:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast<const T*>(this->m_storage.data);  }
                                                              ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() const [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_from(const boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>&) [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:468:60:   required from 'bool boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::operator()(const U&, const key_type&) const [with U = boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:175:44:   required from 'Ret boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::operator()(const key_type&, const U&, typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type*) const [with U = const boost::interprocess::ipcdetail::sync_id*; ValuePtr = boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::key_type = boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type = void]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:104:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value && (! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value)), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type) const [with T1 = boost::intrusive::compact_rbtree_node<void*>*; T2 = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value && (! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value)), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:2028:24:   required from 'static boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr boost::intrusive::bstree_algorithms<NodeTraits>::lower_bound_loop(boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr, boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits<void*, true>; boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr = boost::intrusive::compact_rbtree_node<void*>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:920:96:   required from 'static boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr boost::intrusive::bstree_algorithms<NodeTraits>::lower_bound(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits<void*, true>; boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr = boost::intrusive::compact_rbtree_node<void*>*; boost::intrusive::bstree_algorithms<NodeTraits>::const_node_ptr = const boost::intrusive::compact_rbtree_node<void*>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:334:61:   required from 'boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::lower_bound(const KeyType&, KeyTypeKeyCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >*, boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1337:79:   required from 'boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::lower_bound(const key_type&) [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; KeyOfValue = boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>; Compare = boost::interprocess::ipcdetail::sync_handles::address_less; Allocator = boost::container::new_allocator<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > > >; Options = void; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:217:56:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocParallel'
    finding HTML links ... done
    BatchJobsParam-class                    html  
    BatchtoolsParam-class                   html  
    BiocParallel-package                    html  
    BiocParallelParam-class                 html  
    DoparParam-class                        html  
    MulticoreParam-class                    html  
    SerialParam-class                       html  
    SnowParam-class                         html  
    bpaggregate                             html  
    bpiterate                               html  
    bplapply                                html  
    bploop                                  html  
    bpmapply                                html  
    bpok                                    html  
    bpschedule                              html  
    bptry                                   html  
    bpvalidate                              html  
    bpvec                                   html  
    bpvectorize                             html  
    ipcmutex                                html  
    register                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BiocParallel' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ipcmutex.cpp -o ipcmutex.o
In file included from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/seed_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/mersenne_twister.hpp:30,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:17,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:89: note: #pragma message: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead.
 BOOST_HEADER_DEPRECATED("<boost/integer/integer_log2.hpp>");
                                                                                         ^
In file included from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/map.hpp:30:0,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:37,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/managed_open_or_create_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:26,
                 from ipcmutex.cpp:13:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator*() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >&]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator->() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:220:41:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast<T*>(this->m_storage.data);   }
                                                        ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator*() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::reference = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>&]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::operator->() const [with IIterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator<IIterator, IsConst>::pointer = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:192:20:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::˜tree_node() [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:394:7:   required from 'static void boost::container::allocator_traits<Allocator>::priv_destroy(boost::move_detail::false_type, Allocator&, T*) [with T = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; boost::move_detail::false_type = boost::move_detail::integral_constant<bool, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:322:48:   required from 'static void boost::container::allocator_traits<Allocator>::destroy(Allocator&, T*) [with T = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/destroyers.hpp:155:77:   required from 'boost::container::dtl::scoped_destroy_deallocator<Allocator>::˜scoped_destroy_deallocator() [with Allocator = boost::container::new_allocator<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:947:88:   required from 'boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_unique_commit(MovableConvertible&&, boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_commit_data&) [with MovableConvertible = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_commit_data = boost::intrusive::insert_commit_data_t<boost::intrusive::compact_rbtree_node<void*>*>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:960:20:   required from 'std::pair<boost::container::dtl::iterator_from_iiterator<typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator, false>, bool> boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::insert_unique(MovableConvertible&&) [with MovableConvertible = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/map.hpp:735:55:   required from 'std::pair<typename boost::container::dtl::tree<std::pair<const Key, T>, boost::container::dtl::select1st<Key>, Compare, Allocator, Options>::iterator, bool> boost::container::map<Key, T, Compare, Allocator, Options>::insert(boost::container::map<Key, T, Compare, Allocator, Options>::value_type&&) [with Key = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; T = boost::interprocess::ipcdetail::ref_count_ptr; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::tree<std::pair<const Key, T>, boost::container::dtl::select1st<Key>, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; boost::container::map<Key, T, Compare, Allocator, Options>::value_type = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:203:99:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:172:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  reinterpret_cast<internal_type*>(this->m_storage.data)->˜internal_type();  }
       ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() const [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_from(const boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>&) [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:464:60:   required from 'bool boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::operator()(const key_type&, const U&) const [with U = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:180:44:   required from 'Ret boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::operator()(const U&, const key_type&, typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type*) const [with U = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; ValuePtr = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::key_type = boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type = void]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:110:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value) && boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type) const [with T1 = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; T2 = boost::intrusive::compact_rbtree_node<void*>*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value) && boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:755:38:   required from 'static boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr boost::intrusive::bstree_algorithms<NodeTraits>::find(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits<void*, true>; boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr = boost::intrusive::compact_rbtree_node<void*>*; boost::intrusive::bstree_algorithms<NodeTraits>::const_node_ptr = const boost::intrusive::compact_rbtree_node<void*>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:383:83:   required from 'boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::find(const KeyType&, KeyTypeKeyCompare) [with KeyType = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > > >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>*, std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1301:72:   required from 'boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::find(const key_type&) [with T = std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Compare = std::less<boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> > >; Allocator = boost::container::new_allocator<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::key_type = boost::container::basic_string<char, std::char_traits<char>, boost::container::new_allocator<char> >]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:190:70:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast<const T*>(this->m_storage.data);  }
                                                              ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>::get_data() const [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_from(const boost::container::dtl::tree_node<T, VoidPointer, tree_type_value, OptimizeSize>&) [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:468:60:   required from 'bool boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::operator()(const U&, const key_type&) const [with U = boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>; boost::container::dtl::key_node_compare<KeyCompare, KeyOfValue>::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:175:44:   required from 'Ret boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::operator()(const key_type&, const U&, typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type*) const [with U = const boost::interprocess::ipcdetail::sync_id*; ValuePtr = boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare<ValuePtr, KeyCompare, KeyOfValue, Ret, true>::key_type = boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to<U, ValuePtr>::type = void]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:104:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value && (! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value)), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type) const [with T1 = boost::intrusive::compact_rbtree_node<void*>*; T2 = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T1>::value && (! boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::is_same_or_nodeptr_convertible<T2>::value)), boost::intrusive::detail::key_nodeptr_comp<KeyTypeKeyCompare, ValueTraits, KeyOfValue>::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:2028:24:   required from 'static boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr boost::intrusive::bstree_algorithms<NodeTraits>::lower_bound_loop(boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr, boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits<void*, true>; boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr = boost::intrusive::compact_rbtree_node<void*>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:920:96:   required from 'static boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr boost::intrusive::bstree_algorithms<NodeTraits>::lower_bound(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp<boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >, boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits<void*, true>; boost::intrusive::bstree_algorithms<NodeTraits>::node_ptr = boost::intrusive::compact_rbtree_node<void*>*; boost::intrusive::bstree_algorithms<NodeTraits>::const_node_ptr = const boost::intrusive::compact_rbtree_node<void*>*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:334:61:   required from 'boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::lower_bound(const KeyType&, KeyTypeKeyCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare<boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*> >; ValueTraits = boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >*, boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2<ValueTraits, VoidOrKeyOfValue, VoidOrKeyComp, AlgoType, HeaderHolder>::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1337:79:   required from 'boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::lower_bound(const key_type&) [with T = std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >; KeyOfValue = boost::container::dtl::select1st<const boost::interprocess::ipcdetail::sync_id*>; Compare = boost::interprocess::ipcdetail::sync_handles::address_less; Allocator = boost::container::new_allocator<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > > >; Options = void; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator<boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type<Allocator, boost::intrusive::tree_value_compare<typename boost::container::allocator_traits<Allocator>::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt<Options>::type:: tree_type, typename boost::container::dtl::get_tree_opt<Options>::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator<boost::intrusive::bhtraits<boost::container::dtl::tree_node<std::pair<const boost::interprocess::ipcdetail::sync_id* const, boost::unordered::iterator_detail::iterator<boost::unordered::detail::ptr_node<std::pair<const boost::interprocess::ipcdetail::sync_id, void*> > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits<void*, true>, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree<T, KeyOfValue, Compare, Allocator, Options>::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:217:56:   required from here
C:/Users/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_1.16.6.zip
* DONE (BiocParallel)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'BiocParallel' successfully unpacked and MD5 sums checked
In R CMD INSTALL

Tests output

BiocParallel.Rcheck/tests_i386/test.Rout


R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
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> BiocGenerics:::testPackage("BiocParallel")
cleaning registry...
cleaning registry...
cleaning registry...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding 5 jobs ...
Submitting 5 jobs in 2 chunks using cluster functions 'Interactive' ...

cleaning registry...
Adding 5 jobs ...
Submitting 5 jobs in 2 chunks using cluster functions 'Socket' ...
> > > > > > > > > > > > > > > > 
cleaning registry...
Adding 5 jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 3 jobs ...
Submitting 3 jobs in 3 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 3 jobs ...
Submitting 3 jobs in 2 chunks using cluster functions 'Interactive' ...

cleaning registry...
Adding 3 jobs ...
Submitting 3 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
cleaning registry...
Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
> > Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
test_bpiterate_Params
  chunks greater than number of workers
    ith param
    ith param
  chunks less than number of workers [1]
    ith param
    ith param
  chunks less than number of workers [2]
    ith param
    ith param
  cleanup
test_bpiterate_Params DONE
test_bpiterate_REDUCE
  setup
    ith param
      no REDUCE
      REDUCE
      'reduce.in.order' FALSE [1]
      'reduce.in.order' FALSE [2]
      'reduce.in.order' TRUE [1]
      'reduce.in.order' TRUE [2]
  cleanup
test_bpiterate_REDUCE DONE
test_bplapply_Params
  setup
  sqrt
    serial
    snow
    dopar
    batchjobs
> 
> > 
>   empty input
    serial
    snow
    dopar
    batchjobs
  BatchJobs
  cleanup
test_bplapply_Params DONE
test_bplapply_symbols
  setup
    serial
    snow
    dopar
  cleanup
test_bplapply_symbols DONE


RUNIT TEST PROTOCOL -- Sat Apr 13 00:56:46 2019 
*********************************************** 
Number of test functions: 64 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BiocParallel RUnit Tests - 64 test functions, 0 errors, 0 failures
Number of test functions: 64 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  11.62    1.09  275.68 
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection

BiocParallel.Rcheck/tests_x64/test.Rout


R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BiocParallel")
cleaning registry...
cleaning registry...
cleaning registry...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
cleaning registry...
Adding 5 jobs ...
Submitting 5 jobs in 2 chunks using cluster functions 'Interactive' ...

cleaning registry...
Adding 5 jobs ...
Submitting 5 jobs in 2 chunks using cluster functions 'Socket' ...
> > > > > > > > > > > > > > > > 
cleaning registry...
Adding 5 jobs ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 3 jobs ...
Submitting 3 jobs in 3 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 3 jobs ...
Submitting 3 jobs in 2 chunks using cluster functions 'Interactive' ...

cleaning registry...
Adding 3 jobs ...
Submitting 3 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
Adding 2 jobs ...
Submitting 2 jobs in 2 chunks using cluster functions 'Socket' ...

cleaning registry...
cleaning registry...
Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
> > Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) : error reading from connection
Calls: local ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
test_bpiterate_Params
  chunks greater than number of workers
    ith param
    ith param
  chunks less than number of workers [1]
    ith param
    ith param
  chunks less than number of workers [2]
    ith param
    ith param
  cleanup
test_bpiterate_Params DONE
test_bpiterate_REDUCE
  setup
    ith param
      no REDUCE
      REDUCE
      'reduce.in.order' FALSE [1]
      'reduce.in.order' FALSE [2]
      'reduce.in.order' TRUE [1]
      'reduce.in.order' TRUE [2]
  cleanup
test_bpiterate_REDUCE DONE
test_bplapply_Params
  setup
  sqrt
    serial
    snow
    dopar
    batchjobs
> 
> > 
>   empty input
    serial
    snow
    dopar
    batchjobs
  BatchJobs
  cleanup
test_bplapply_Params DONE
test_bplapply_symbols
  setup
    serial
    snow
    dopar
  cleanup
test_bplapply_symbols DONE


RUNIT TEST PROTOCOL -- Sat Apr 13 01:01:46 2019 
*********************************************** 
Number of test functions: 64 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BiocParallel RUnit Tests - 64 test functions, 0 errors, 0 failures
Number of test functions: 64 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  15.46    1.45  300.04 
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls: <Anonymous> ... sendData.SOCKnode -> serialize -> summary -> summary.connection

Example timings

BiocParallel.Rcheck/examples_i386/BiocParallel-Ex.timings

nameusersystemelapsed
BatchJobsParam-class3.060.173.46
BatchtoolsParam-class 0.50 0.0319.76
BiocParallelParam-class0.010.000.02
DoparParam-class000
MulticoreParam-class0.130.002.19
SerialParam-class000
SnowParam-class0.390.034.56
bpaggregate 5.84 0.4113.37
bpiterate000
bplapply0.020.005.47
bploop000
bpmapply0.010.022.74
bpok0.040.019.68
bpschedule0.030.000.03
bptry0.030.006.16
bpvalidate0.170.030.20
bpvec0.500.025.55
bpvectorize0.020.005.31
ipcmutex 0.01 0.0313.24
register0.030.035.17

BiocParallel.Rcheck/examples_x64/BiocParallel-Ex.timings

nameusersystemelapsed
BatchJobsParam-class3.100.173.27
BatchtoolsParam-class 0.51 0.0517.36
BiocParallelParam-class000
DoparParam-class000
MulticoreParam-class0.200.002.26
SerialParam-class000
SnowParam-class0.450.014.70
bpaggregate 6.27 0.1712.55
bpiterate000
bplapply0.030.005.04
bploop000
bpmapply0.000.022.61
bpok 0.06 0.0110.10
bpschedule0.020.000.01
bptry0.010.048.75
bpvalidate0.140.030.17
bpvec0.560.005.24
bpvectorize0.040.016.20
ipcmutex 0.01 0.0213.02
register0.020.026.75