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INSTALL report for BiocParallel on malbec1

This page was generated on 2019-04-16 11:49:49 -0400 (Tue, 16 Apr 2019).

Package 142/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocParallel 1.16.6
Bioconductor Package Maintainer
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/BiocParallel
Branch: RELEASE_3_8
Last Commit: 7f7a54c
Last Changed Date: 2019-02-08 09:10:39 -0400 (Fri, 08 Feb 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64 [ OK ] OK  ERROR 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: BiocParallel
Version: 1.16.6
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BiocParallel
StartedAt: 2019-04-15 18:04:34 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:04:48 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 13.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BiocParallel
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘BiocParallel’ ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for shm_open in -lrt... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/BH/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c ipcmutex.cpp -o ipcmutex.o
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/seed_impl.hpp:26,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/mersenne_twister.hpp:30,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:17,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:89: note: #pragma message: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead.
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o BiocParallel.so ipcmutex.o -lrt -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/BiocParallel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiocParallel)