Back to Multiple platform build/check report for BioC 3.8
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for BioQC on tokay1

This page was generated on 2019-04-13 11:26:08 -0400 (Sat, 13 Apr 2019).

Package 156/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioQC 1.10.0
Jitao David Zhang
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/BioQC
Branch: RELEASE_3_8
Last Commit: 5c71aee
Last Changed Date: 2018-10-30 11:41:59 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BioQC
Version: 1.10.0
Command: rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioQC.buildbin-libdir BioQC_1.10.0.tar.gz
StartedAt: 2019-04-13 06:58:11 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 06:58:48 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 37.6 seconds
RetCode: 0
Status:  OK  
PackageFile: BioQC_1.10.0.zip
PackageFileSize: 833.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioQC.buildbin-libdir BioQC_1.10.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'BioQC' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c gini.c -o gini.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c read_gmt.cpp -o read_gmt.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c stat_rank.c -o stat_rank.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c wmw_test.c -o wmw_test.o
wmw_test.c: In function 'wmw_test_list':
wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function 'wmw_test':
wmw_test.c:152:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function 'signed_wmw_test_list':
wmw_test.c:185:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function 'signed_wmw_test':
wmw_test.c:248:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/BioQC.buildbin-libdir/BioQC/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BioQC'
    finding HTML links ... done
    BaseIndexList-class                     html  
    GmtList-class                           html  
    GmtList                                 html  
    IndexList-class                         html  
    IndexList                               html  
    SignedGenesets-class                    html  
    SignedGenesets                          html  
    SignedIndexList-class                   html  
    SignedIndexList                         html  
    absLog10p                               html  
    as.gmtlist                              html  
    entropy                                 html  
    filterPmat                              html  
    gini                                    html  
    gmtlist2signedGenesets                  html  
    matchGenes                              html  
    offset-BaseIndexList-method             html  
    offset-set                              html  
    readGmt                                 html  
    readSignedGmt                           html  
    simplifyMatrix                          html  
    valTypes                                html  
    wmwTest                                 html  
    wmwTestInR                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BioQC' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c gini.c -o gini.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c read_gmt.cpp -o read_gmt.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c stat_rank.c -o stat_rank.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c wmw_test.c -o wmw_test.o
wmw_test.c: In function 'wmw_test_list':
wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function 'wmw_test':
wmw_test.c:152:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function 'signed_wmw_test_list':
wmw_test.c:185:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function 'signed_wmw_test':
wmw_test.c:248:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/BioQC.buildbin-libdir/BioQC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioQC' as BioQC_1.10.0.zip
* DONE (BioQC)
In R CMD INSTALL
In R CMD INSTALL