phenoDist 1.27.1
Xian Zhang
| Snapshot Date: 2018-04-29 16:46:14 -0400 (Sun, 29 Apr 2018) |
| URL: https://git.bioconductor.org/packages/phenoDist |
| Branch: master |
| Last Commit: 1ee5fb4 |
| Last Changed Date: 2018-03-16 12:49:42 -0400 (Fri, 16 Mar 2018) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### chmod a+r phenoDist -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data phenoDist
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* checking for file 'phenoDist/DESCRIPTION' ... OK
* preparing 'phenoDist':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: EBImage
Attaching package: 'EBImage'
The following object is masked _by_ '.GlobalEnv':
display
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:EBImage':
channel
Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph//conf/imageconf.txt'
Content type 'text/html; charset=UTF-8' length 10474 bytes (10 KB)
==================================================
downloaded 10 KB
Warning in parseImageConf("conf/imageconf.txt", localPath = localPath, serverURL = serverURL) :
Assuming empty value for missing field(s): SourceFilenamePatternAssuming empty value for missing field(s): PlateNamesAssuming empty value for missing field(s): ReplicateNamesAssuming empty value for missing field(s): RowNamesAssuming empty value for missing field(s): ColNamesAssuming empty value for missing field(s): ChannelNames
Error: processing vignette 'phenoDist.Rnw' failed with diagnostics:
chunk 3 (label = imageHTSSetup)
Error in 1:nbPlates : NA/NaN argument
Execution halted