Katherine S. Pollard
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/multtest |
| Branch: RELEASE_3_8 |
| Last Commit: 4dfe71c |
| Last Changed Date: 2018-10-30 11:41:40 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:19:10 -0400 (Sat, 13 Apr 2019).
| Package 1027/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| multtest 2.38.0 Katherine S. Pollard
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: multtest |
| Version: 2.38.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/multtest_2.38.0.tar.gz && rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multtest.buildbin-libdir multtest_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL multtest_2.38.0.zip && rm multtest_2.38.0.tar.gz multtest_2.38.0.zip |
| StartedAt: 2019-04-12 18:44:05 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 18:44:53 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 47.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/multtest_2.38.0.tar.gz && rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=multtest.buildbin-libdir multtest_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL multtest_2.38.0.zip && rm multtest_2.38.0.tar.gz multtest_2.38.0.zip
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100 1269k 100 1269k 0 0 16.5M 0 --:--:-- --:--:-- --:--:-- 17.4M
install for i386
* installing *source* package 'multtest' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c Rpack.c -o Rpack.o
Rpack.c: In function 'get_samples_T':
Rpack.c:139:17: warning: 'sd.test' may be used uninitialized in this function [-Wmaybe-uninitialized]
SAMPLING_DATA sd;
^
Rpack.c:143:3: warning: 'sd.fn_maxT' may be used uninitialized in this function [-Wmaybe-uninitialized]
get_all_samples_T(V,n,T,*pna,sd.fn_maxT,sd.fn_first,sd.fn_next,(void*)extra);
^
Rpack.c: In function 'get_samples_P':
Rpack.c:150:17: warning: 'sd.test' may be used uninitialized in this function [-Wmaybe-uninitialized]
SAMPLING_DATA sd;
^
Rpack.c:154:3: warning: 'sd.fn_minP' may be used uninitialized in this function [-Wmaybe-uninitialized]
get_all_samples_P(V,n,P,*pna,sd.fn_minP,sd.fn_first,sd.fn_next,sd.fn_cmp,(void*)extra);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c VScount.c -o VScount.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c block_sampling_fixed.c -o block_sampling_fixed.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c bootloop.c -o bootloop.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c mt.c -o mt.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c pairt_sampling.c -o pairt_sampling.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c random.c -o random.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c sampling.c -o sampling.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c sampling_fixed.c -o sampling_fixed.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c stat_func.c -o stat_func.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c stat_order.c -o stat_order.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/multtest.buildbin-libdir/multtest/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'multtest'
finding HTML links ... done
EBMTP-class html
EBMTP html
Hsets html
MTP-class html
MTP-methods html
MTP html
boot.null html
corr.null html
fwer2gfwer html
get.index html
golub html
meanX html
mt.internal html
mt.maxT html
mt.plot html
mt.rawp2adjp html
mt.reject html
mt.sample.teststat html
mt.teststat html
ss.maxT html
wapply html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'multtest' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c Rpack.c -o Rpack.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c VScount.c -o VScount.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c block_sampling_fixed.c -o block_sampling_fixed.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c bootloop.c -o bootloop.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c mt.c -o mt.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c pairt_sampling.c -o pairt_sampling.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c random.c -o random.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c sampling.c -o sampling.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c sampling_fixed.c -o sampling_fixed.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c stat_func.c -o stat_func.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c stat_order.c -o stat_order.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o multtest.dll tmp.def Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/multtest.buildbin-libdir/multtest/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'multtest' as multtest_2.38.0.zip
* DONE (multtest)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'multtest' successfully unpacked and MD5 sums checked
In R CMD INSTALL