Hervé Pagès
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/HDF5Array |
| Branch: RELEASE_3_8 |
| Last Commit: 0b8ae1d |
| Last Changed Date: 2018-12-05 14:45:01 -0400 (Wed, 05 Dec 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:26:24 -0400 (Sat, 13 Apr 2019).
| Package 709/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HDF5Array 1.10.1 Hervé Pagès
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: HDF5Array |
| Version: 1.10.1 |
| Command: rm -rf HDF5Array.buildbin-libdir && mkdir HDF5Array.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HDF5Array.buildbin-libdir HDF5Array_1.10.1.tar.gz |
| StartedAt: 2019-04-13 07:25:24 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 07:27:51 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 146.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: HDF5Array_1.10.1.zip |
| PackageFileSize: 7.991 MiB |
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### Running command:
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### rm -rf HDF5Array.buildbin-libdir && mkdir HDF5Array.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HDF5Array.buildbin-libdir HDF5Array_1.10.1.tar.gz
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install for i386
* installing *source* package 'HDF5Array' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HDF5Array'
finding HTML links ... done
HDF5Array-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:41: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:42: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:47: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:50: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:95: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:97: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/HDF5Array-class.Rd:109: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
TENxMatrix-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:54: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:55: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:61: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:64: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:102: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:103: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:121: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:123: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:132: file link 'setAutoBPPARAM' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:133: file link 'setAutoBlockSize' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:136: file link 'colGrid' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:137: file link 'blockApply' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:145: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/TENxMatrix-class.Rd:145: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
dump-management html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/dump-management.Rd:123: file link 'type' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/dump-management.Rd:216: file link 'type' in package 'DelayedArray' does not exist and so has been treated as a topic
saveHDF5SummarizedExperiment html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/saveHDF5SummarizedExperiment.Rd:11: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/saveHDF5SummarizedExperiment.Rd:22: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/saveHDF5SummarizedExperiment.Rd:26: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/saveHDF5SummarizedExperiment.Rd:81: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/saveHDF5SummarizedExperiment.Rd:92: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/saveHDF5SummarizedExperiment.Rd:93: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
writeHDF5Array html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpUdbQnm/R.INSTALL34ec1b482311/HDF5Array/man/writeHDF5Array.Rd:111: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
writeTENxMatrix html
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'HDF5Array' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HDF5Array' as HDF5Array_1.10.1.zip
* DONE (HDF5Array)
In R CMD INSTALL
In R CMD INSTALL