Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-03-28 12:45:28 -0400 (Wed, 28 Mar 2018).
Package 20/21 | Hostname | OS / Arch | INSTALL | BUILD | BUILD WEB VIG | ||||||
testproj 0.0.99 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] |
Package: testproj |
Version: 0.0.99 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")' |
StartedAt: 2018-03-28 08:19:28 -0400 (Wed, 28 Mar 2018) |
EndedAt: 2018-03-28 08:19:39 -0400 (Wed, 28 Mar 2018) |
EllapsedTime: 11.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")' ### ############################################################################## ############################################################################## > rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment") processing file: testfile.Rmd | | | 0% | |.... | 6% inline R code fragments | |........ | 12% label: macro (with options) List of 1 $ echo: logi FALSE | |............ | 18% inline R code fragments | |................ | 24% label: no-cap | |..................... | 29% inline R code fragments | |......................... | 35% label: plot (with options) List of 2 $ fig.cap: chr "Regular figure. The first sentence of the figure caption is automatically emphasized to serve as figure title." $ echo : logi FALSE | |............................. | 41% ordinary text without R code | |................................. | 47% label: wide (with options) List of 3 $ fig.cap : chr "Wide figure. A plot produced by a code chunk with option `fig.wide = TRUE`." $ fig.wide: logi TRUE $ echo : logi FALSE | |..................................... | 53% ordinary text without R code | |......................................... | 59% label: small (with options) List of 3 $ fig.cap : chr "Small figure. A plot produced by a code chunk with option `fig.small = TRUE`." $ fig.small: logi TRUE $ echo : logi FALSE | |............................................. | 65% ordinary text without R code | |................................................. | 71% label: mtcars | |...................................................... | 76% ordinary text without R code | |.......................................................... | 82% label: mtcars2 | |.............................................................. | 88% ordinary text without R code | |.................................................................. | 94% label: sessionInfo (with options) List of 1 $ echo: logi FALSE | |......................................................................| 100% ordinary text without R code output file: testfile.knit.md /usr/bin/pandoc +RTS -K512m -RTS testfile.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output testfile.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --include-in-header /tmp/RtmpkzdVjK/rmarkdown-str678c308ce9e4.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: testfile.html Warning message: The label(s) non-existing-label not found > > > knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R") processing file: .buildwebvig/testproj/testfile.Rmd | | | 0% | |.... | 6% | |........ | 12% | |........... | 18% | |............... | 24% | |................... | 29% | |....................... | 35% | |........................... | 41% | |............................... | 47% | |.................................. | 53% | |...................................... | 59% | |.......................................... | 65% | |.............................................. | 71% | |.................................................. | 76% | |...................................................... | 82% | |......................................................... | 88% | |............................................................. | 94% | |.................................................................| 100% output file: .buildwebvig/testproj/testfile.R [1] ".buildwebvig/testproj/testfile.R" > > > rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment") processing file: testproj.Rmd | | | 0% | |.... | 6% inline R code fragments | |........ | 12% label: macro (with options) List of 1 $ echo: logi FALSE | |............ | 18% inline R code fragments | |................ | 24% label: no-cap | |..................... | 29% inline R code fragments | |......................... | 35% label: plot (with options) List of 2 $ fig.cap: chr "Regular figure. The first sentence of the figure caption is automatically emphasized to serve as figure title." $ echo : logi FALSE | |............................. | 41% ordinary text without R code | |................................. | 47% label: wide (with options) List of 3 $ fig.cap : chr "Wide figure. A plot produced by a code chunk with option `fig.wide = TRUE`." $ fig.wide: logi TRUE $ echo : logi FALSE | |..................................... | 53% ordinary text without R code | |......................................... | 59% label: small (with options) List of 3 $ fig.cap : chr "Small figure. A plot produced by a code chunk with option `fig.small = TRUE`." $ fig.small: logi TRUE $ echo : logi FALSE | |............................................. | 65% ordinary text without R code | |................................................. | 71% label: mtcars | |...................................................... | 76% ordinary text without R code | |.......................................................... | 82% label: mtcars2 | |.............................................................. | 88% ordinary text without R code | |.................................................................. | 94% label: sessionInfo (with options) List of 1 $ echo: logi FALSE | |......................................................................| 100% ordinary text without R code output file: testproj.knit.md /usr/bin/pandoc +RTS -K512m -RTS testproj.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output testproj.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --include-in-header /tmp/RtmpyIDyjV/rmarkdown-str6902f3cc767.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: testproj.html Warning message: The label(s) non-existing-label not found > > > knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R") processing file: .buildwebvig/testproj/testproj.Rmd | | | 0% | |.... | 6% | |........ | 12% | |........... | 18% | |............... | 24% | |................... | 29% | |....................... | 35% | |........................... | 41% | |............................... | 47% | |.................................. | 53% | |...................................... | 59% | |.......................................... | 65% | |.............................................. | 71% | |.................................................. | 76% | |...................................................... | 82% | |......................................................... | 88% | |............................................................. | 94% | |.................................................................| 100% output file: .buildwebvig/testproj/testproj.R [1] ".buildwebvig/testproj/testproj.R" > >