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BUILD WEB VIG report for testproj on malbec2

This page was generated on 2018-03-28 12:45:28 -0400 (Wed, 28 Mar 2018).

Package 20/21HostnameOS / ArchINSTALLBUILDBUILD WEB VIG
testproj 0.0.99
Bioconductor Package Maintainer
Snapshot Date: 2018-03-28 07:35:02 -0400 (Wed, 28 Mar 2018)
URL: https://git.bioconductor.org/packages/testproj
Branch: master
Last Commit: d8a2020
Last Changed Date: 2018-01-30 04:20:15 -0400 (Tue, 30 Jan 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: testproj
Version: 0.0.99
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")'
StartedAt: 2018-03-28 08:19:28 -0400 (Wed, 28 Mar 2018)
EndedAt: 2018-03-28 08:19:39 -0400 (Wed, 28 Mar 2018)
EllapsedTime: 11.5 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")'
###
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##############################################################################


> rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")


processing file: testfile.Rmd

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   inline R code fragments


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label: macro (with options) 
List of 1
 $ echo: logi FALSE


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   inline R code fragments


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label: no-cap

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   inline R code fragments


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label: plot (with options) 
List of 2
 $ fig.cap: chr "Regular figure. The first sentence of the figure caption is automatically emphasized to serve as figure title."
 $ echo   : logi FALSE


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  ordinary text without R code


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label: wide (with options) 
List of 3
 $ fig.cap : chr "Wide figure. A plot produced by a code chunk with option `fig.wide = TRUE`."
 $ fig.wide: logi TRUE
 $ echo    : logi FALSE


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  ordinary text without R code


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label: small (with options) 
List of 3
 $ fig.cap  : chr "Small figure. A plot produced by a code chunk with option `fig.small = TRUE`."
 $ fig.small: logi TRUE
 $ echo     : logi FALSE


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  ordinary text without R code


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label: mtcars

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  ordinary text without R code


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label: mtcars2

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  ordinary text without R code


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label: sessionInfo (with options) 
List of 1
 $ echo: logi FALSE


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  ordinary text without R code


output file: testfile.knit.md

/usr/bin/pandoc +RTS -K512m -RTS testfile.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output testfile.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --include-in-header /tmp/RtmpkzdVjK/rmarkdown-str678c308ce9e4.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' 

Output created: testfile.html
Warning message:
The label(s) non-existing-label not found 
> 
> 
> knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")


processing file: .buildwebvig/testproj/testfile.Rmd

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output file: .buildwebvig/testproj/testfile.R

[1] ".buildwebvig/testproj/testfile.R"
> 
> 
> rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")


processing file: testproj.Rmd

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   inline R code fragments


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label: macro (with options) 
List of 1
 $ echo: logi FALSE


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  |............                                                          |  18%
   inline R code fragments


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  |................                                                      |  24%
label: no-cap

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  |.....................                                                 |  29%
   inline R code fragments


  |                                                                            
  |.........................                                             |  35%
label: plot (with options) 
List of 2
 $ fig.cap: chr "Regular figure. The first sentence of the figure caption is automatically emphasized to serve as figure title."
 $ echo   : logi FALSE


  |                                                                            
  |.............................                                         |  41%
  ordinary text without R code


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  |.................................                                     |  47%
label: wide (with options) 
List of 3
 $ fig.cap : chr "Wide figure. A plot produced by a code chunk with option `fig.wide = TRUE`."
 $ fig.wide: logi TRUE
 $ echo    : logi FALSE


  |                                                                            
  |.....................................                                 |  53%
  ordinary text without R code


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  |.........................................                             |  59%
label: small (with options) 
List of 3
 $ fig.cap  : chr "Small figure. A plot produced by a code chunk with option `fig.small = TRUE`."
 $ fig.small: logi TRUE
 $ echo     : logi FALSE


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  |.............................................                         |  65%
  ordinary text without R code


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  |.................................................                     |  71%
label: mtcars

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  |......................................................                |  76%
  ordinary text without R code


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label: mtcars2

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  |..............................................................        |  88%
  ordinary text without R code


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  |..................................................................    |  94%
label: sessionInfo (with options) 
List of 1
 $ echo: logi FALSE


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  ordinary text without R code


output file: testproj.knit.md

/usr/bin/pandoc +RTS -K512m -RTS testproj.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output testproj.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --include-in-header /tmp/RtmpyIDyjV/rmarkdown-str6902f3cc767.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' 

Output created: testproj.html
Warning message:
The label(s) non-existing-label not found 
> 
> 
> knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")


processing file: .buildwebvig/testproj/testproj.Rmd

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output file: .buildwebvig/testproj/testproj.R

[1] ".buildwebvig/testproj/testproj.R"
> 
>