Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-05-18 12:48:04 -0400 (Fri, 18 May 2018).
Package 7/21 | Hostname | OS / Arch | INSTALL | BUILD | BUILD WEB VIG | ||||||
eQTL 1.2.0 Vincent Carey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] |
Package: eQTL |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/eQTL/cloudeqtl.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/eQTL/cloudeqtl.Rmd", ".buildwebvig/eQTL/cloudeqtl.R")' |
StartedAt: 2018-05-18 08:42:35 -0400 (Fri, 18 May 2018) |
EndedAt: 2018-05-18 08:48:44 -0400 (Fri, 18 May 2018) |
EllapsedTime: 368.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/eQTL/cloudeqtl.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/eQTL/cloudeqtl.Rmd", ".buildwebvig/eQTL/cloudeqtl.R")' ### ############################################################################## ############################################################################## > rmarkdown::render(".buildwebvig/eQTL/cloudeqtl.Rmd", output_format="BiocStyle:::html_fragment") processing file: cloudeqtl.Rmd | | | 0% | |. | 2% ordinary text without R code | |... | 4% label: unnamed-chunk-1 (with options) List of 2 $ echo : logi FALSE $ results: chr "hide" | |.... | 6% label: unnamed-chunk-2 (with options) List of 2 $ echo : logi FALSE $ results: chr "hide" | |...... | 8% inline R code fragments | |....... | 10% label: dolo (with options) List of 1 $ echo: logi FALSE | |......... | 12% label: lkex (with options) List of 1 $ eval: logi FALSE | |.......... | 14% ordinary text without R code | |........... | 16% label: lookf1 (with options) List of 1 $ echo: logi TRUE | |............. | 18% inline R code fragments | |.............. | 20% label: demoy (with options) List of 5 $ fig : logi TRUE $ fig.width : num 7 $ fig.height: num 4 $ echo : logi FALSE $ results : chr "hide" | |................ | 22% label: shoit (with options) List of 1 $ eval: logi FALSE | |................. | 24% ordinary text without R code | |................... | 27% label: bag (with options) List of 4 $ fig : logi TRUE $ fig.width : num 4 $ fig.height: num 4 $ echo : logi FALSE | |.................... | 29% inline R code fragments | |..................... | 31% label: bag2 | |....................... | 33% ordinary text without R code | |........................ | 35% label: getseq | |.......................... | 37% ordinary text without R code | |........................... | 39% label: getann | |............................. | 41% ordinary text without R code | |.............................. | 43% label: getgen | |............................... | 45% ordinary text without R code | |................................. | 47% label: showscript (with options) List of 1 $ eval: logi FALSE | |.................................. | 49% ordinary text without R code | |.................................... | 51% label: lkqq (with options) List of 1 $ eval: logi FALSE | |..................................... | 53% ordinary text without R code | |....................................... | 55% label: co (with options) List of 1 $ echo: logi FALSE | |........................................ | 57% ordinary text without R code | |......................................... | 59% label: dosens (with options) List of 1 $ fig: logi TRUE | |........................................... | 61% label: doeq (with options) List of 1 $ eval: logi FALSE | |............................................ | 63% label: nnn (with options) List of 1 $ echo: logi FALSE | |.............................................. | 65% ordinary text without R code | |............................................... | 67% label: lkar | |................................................. | 69% ordinary text without R code | |.................................................. | 71% label: coded (with options) List of 1 $ eval: logi FALSE | |................................................... | 73% ordinary text without R code | |..................................................... | 76% label: disc | |...................................................... | 78% ordinary text without R code | |........................................................ | 80% label: fit | |......................................................... | 82% ordinary text without R code | |........................................................... | 84% label: cali | |............................................................ | 86% ordinary text without R code | |............................................................. | 88% label: demomodco (with options) List of 3 $ fig : logi TRUE $ fig.width : num 7 $ fig.height: num 4 | |............................................................... | 90% ordinary text without R code | |................................................................ | 92% label: cleanup (with options) List of 1 $ echo: logi FALSE | |.................................................................. | 94% ordinary text without R code | |................................................................... | 96% label: unnamed-chunk-3 (with options) List of 2 $ results: chr "asis" $ echo : logi FALSE | |..................................................................... | 98% ordinary text without R code | |......................................................................| 100% label: sess output file: cloudeqtl.knit.md /usr/bin/pandoc +RTS -K512m -RTS cloudeqtl.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output cloudeqtl.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: cloudeqtl.html > > > knitr::purl(".buildwebvig/eQTL/cloudeqtl.Rmd", ".buildwebvig/eQTL/cloudeqtl.R") processing file: .buildwebvig/eQTL/cloudeqtl.Rmd | | | 0% | |. | 2% | |... | 4% | |.... | 6% | |..... | 8% | |....... | 10% | |........ | 12% | |......... | 14% | |........... | 16% | |............ | 18% | |............. | 20% | |............... | 22% | |................ | 24% | |................. | 27% | |................... | 29% | |.................... | 31% | |..................... | 33% | |....................... | 35% | |........................ | 37% | |......................... | 39% | |........................... | 41% | |............................ | 43% | |............................. | 45% | |............................... | 47% | |................................ | 49% | |................................. | 51% | |.................................. | 53% | |.................................... | 55% | |..................................... | 57% | |...................................... | 59% | |........................................ | 61% | |......................................... | 63% | |.......................................... | 65% | |............................................ | 67% | |............................................. | 69% | |.............................................. | 71% | |................................................ | 73% | |................................................. | 76% | |.................................................. | 78% | |.................................................... | 80% | |..................................................... | 82% | |...................................................... | 84% | |........................................................ | 86% | |......................................................... | 88% | |.......................................................... | 90% | |............................................................ | 92% | |............................................................. | 94% | |.............................................................. | 96% | |................................................................ | 98% | |.................................................................| 100% output file: .buildwebvig/eQTL/cloudeqtl.R [1] ".buildwebvig/eQTL/cloudeqtl.R" > >