Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-10-15 12:45:18 -0400 (Mon, 15 Oct 2018).
Package 8/21 | Hostname | OS / Arch | INSTALL | BUILD | ||||||
ExpressionNormalizationWorkflow 1.4.0 Karthikeyan Murugesan
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK |
Package: ExpressionNormalizationWorkflow |
Version: 1.4.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/workflows/src/contrib/ExpressionNormalizationWorkflow_1.4.0.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.4.0.zip && rm ExpressionNormalizationWorkflow_1.4.0.tar.gz ExpressionNormalizationWorkflow_1.4.0.zip |
StartedAt: 2018-10-15 07:55:22 -0400 (Mon, 15 Oct 2018) |
EndedAt: 2018-10-15 07:56:48 -0400 (Mon, 15 Oct 2018) |
EllapsedTime: 86.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/workflows/src/contrib/ExpressionNormalizationWorkflow_1.4.0.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.4.0.zip && rm ExpressionNormalizationWorkflow_1.4.0.tar.gz ExpressionNormalizationWorkflow_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1644k 100 1644k 0 0 26.5M 0 --:--:-- --:--:-- --:--:-- 29.7M install for i386 * installing *source* package 'ExpressionNormalizationWorkflow' ... ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' ** help Warning: C:/Users/biocbuild/bbs-3.7-workflows/tmpdir/Rtmpuydq5f/R.INSTALLfe058f326b/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:29: All text must be in a section Warning: C:/Users/biocbuild/bbs-3.7-workflows/tmpdir/Rtmpuydq5f/R.INSTALLfe058f326b/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:30: All text must be in a section *** installing help indices converting help for package 'ExpressionNormalizationWorkflow' finding HTML links ... done ExpressionNormalizationWorkflow-package html conTocat html expSetobj html pvcAnaly html finding level-2 HTML links ... done snmAnaly html surVarAnaly html ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' In R CMD INSTALL install for x64 * installing *source* package 'ExpressionNormalizationWorkflow' ... ** testing if installed package can be loaded Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow' Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow' * MD5 sums packaged installation of 'ExpressionNormalizationWorkflow' as ExpressionNormalizationWorkflow_1.4.0.zip * DONE (ExpressionNormalizationWorkflow) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'ExpressionNormalizationWorkflow' successfully unpacked and MD5 sums checked In R CMD INSTALL