Back to Workflows build report for BioC 3.7

INSTALL report for ExpressionNormalizationWorkflow on tokay2

This page was generated on 2018-10-15 12:45:18 -0400 (Mon, 15 Oct 2018).

Package 8/21HostnameOS / ArchINSTALLBUILD
ExpressionNormalizationWorkflow 1.4.0
Karthikeyan Murugesan
Snapshot Date: 2018-10-15 07:35:11 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/ExpressionNormalizationWorkflow
Branch: RELEASE_3_7
Last Commit: d4865f5
Last Changed Date: 2018-04-30 10:07:09 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK 

Summary

Package: ExpressionNormalizationWorkflow
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/workflows/src/contrib/ExpressionNormalizationWorkflow_1.4.0.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.4.0.zip && rm ExpressionNormalizationWorkflow_1.4.0.tar.gz ExpressionNormalizationWorkflow_1.4.0.zip
StartedAt: 2018-10-15 07:55:22 -0400 (Mon, 15 Oct 2018)
EndedAt: 2018-10-15 07:56:48 -0400 (Mon, 15 Oct 2018)
EllapsedTime: 86.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/workflows/src/contrib/ExpressionNormalizationWorkflow_1.4.0.tar.gz && rm -rf ExpressionNormalizationWorkflow.buildbin-libdir && mkdir ExpressionNormalizationWorkflow.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionNormalizationWorkflow.buildbin-libdir ExpressionNormalizationWorkflow_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow_1.4.0.zip && rm ExpressionNormalizationWorkflow_1.4.0.tar.gz ExpressionNormalizationWorkflow_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1644k  100 1644k    0     0  26.5M      0 --:--:-- --:--:-- --:--:-- 29.7M

install for i386

* installing *source* package 'ExpressionNormalizationWorkflow' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
** help
Warning: C:/Users/biocbuild/bbs-3.7-workflows/tmpdir/Rtmpuydq5f/R.INSTALLfe058f326b/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:29: All text must be in a section
Warning: C:/Users/biocbuild/bbs-3.7-workflows/tmpdir/Rtmpuydq5f/R.INSTALLfe058f326b/ExpressionNormalizationWorkflow/man/ExpressionNormalizationWorkflow-package.Rd:30: All text must be in a section
*** installing help indices
  converting help for package 'ExpressionNormalizationWorkflow'
    finding HTML links ... done
    ExpressionNormalizationWorkflow-package
                                            html  
    conTocat                                html  
    expSetobj                               html  
    pvcAnaly                                html  
    finding level-2 HTML links ... done

    snmAnaly                                html  
    surVarAnaly                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
In R CMD INSTALL

install for x64

* installing *source* package 'ExpressionNormalizationWorkflow' ...
** testing if installed package can be loaded
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
* MD5 sums
packaged installation of 'ExpressionNormalizationWorkflow' as ExpressionNormalizationWorkflow_1.4.0.zip
* DONE (ExpressionNormalizationWorkflow)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ExpressionNormalizationWorkflow' successfully unpacked and MD5 sums checked
In R CMD INSTALL