Back to Multiple platform build/check report for BioC 3.7 experimental data |
This page was generated on 2018-10-16 14:16:35 -0400 (Tue, 16 Oct 2018).
Package 3/342 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
affydata 1.28.0 Harris Jaffee
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ WARNINGS ] |
Package: affydata |
Version: 1.28.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:affydata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings affydata_1.28.0.tar.gz |
StartedAt: 2018-10-16 10:36:41 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 10:37:45 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 63.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: affydata.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:affydata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings affydata_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/affydata.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘affydata/DESCRIPTION’ ... OK * this is package ‘affydata’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘affydata’ can be installed ... OK * checking installed package size ... NOTE installed size is 23.3Mb sub-directories of 1Mb or more: celfiles 16.2Mb data 4.4Mb extracelfiles 2.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... WARNING Error: .onLoad failed in loadNamespace() for 'affydata', details: call: data(package = pkgname) error: could not find function "data" Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘affy’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Error: .onLoad failed in loadNamespace() for 'affydata', details: call: data(package = pkgname) error: could not find function "data" Execution halted * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress Dilution.rda 4.4Mb 2.5Mb xz * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 3 NOTEs See ‘/home/biocbuild/bbs-3.7-data-experiment/meat/affydata.Rcheck/00check.log’ for details.
affydata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL affydata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘affydata’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Package LibPath Item [1,] "affydata" "/home/biocbuild/bbs-3.7-bioc/R/library" "Dilution" Title [1,] "AffyBatch instance Dilution" * DONE (affydata)