| Back to Multiple platform build/check report for BioC 3.7 experimental data |
This page was generated on 2018-10-16 14:16:35 -0400 (Tue, 16 Oct 2018).
| Package 3/342 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| affydata 1.28.0 Harris Jaffee
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ WARNINGS ] |
| Package: affydata |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:affydata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings affydata_1.28.0.tar.gz |
| StartedAt: 2018-10-16 10:36:41 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 10:37:45 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 63.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: affydata.Rcheck |
| Warnings: 2 |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:affydata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings affydata_1.28.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/affydata.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘affydata/DESCRIPTION’ ... OK
* this is package ‘affydata’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘affydata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 23.3Mb
sub-directories of 1Mb or more:
celfiles 16.2Mb
data 4.4Mb
extracelfiles 2.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... WARNING
Error: .onLoad failed in loadNamespace() for 'affydata', details:
call: data(package = pkgname)
error: could not find function "data"
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘affy’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Error: .onLoad failed in loadNamespace() for 'affydata', details:
call: data(package = pkgname)
error: could not find function "data"
Execution halted
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
Dilution.rda 4.4Mb 2.5Mb xz
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.7-data-experiment/meat/affydata.Rcheck/00check.log’
for details.
affydata.Rcheck/00install.out
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL affydata
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘affydata’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Package LibPath Item
[1,] "affydata" "/home/biocbuild/bbs-3.7-bioc/R/library" "Dilution"
Title
[1,] "AffyBatch instance Dilution"
* DONE (affydata)