Package: matter

Version: 1.6.0

Command: rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R matter.buildbin-libdir

StartedAt: 2018-10-17 01:38:32 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 01:39:19 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 47.6 seconds

RetCode: 0

Status:  OK

PackageFile: matter_1.6.0.tgz

PackageFileSize: 2.957 MiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf matter.buildbin-libdir && mkdir matter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh matter_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R matter.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=matter.buildbin-libdir matter_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘matter’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c bsearch.cpp -o bsearch.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.cpp -o init.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c matter.cpp -o matter.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o matter.so bsearch.o init.o matter.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/matter.buildbin-libdir/matter/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘apply’ in package ‘matter’
Creating a new generic function for ‘scale’ in package ‘matter’
Creating a new generic function for ‘biglm’ in package ‘matter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (matter)


>>>>>>> 
>>>>>>> FIXING LINKS FOR matter.buildbin-libdir/matter/libs//matter.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "matter.buildbin-libdir/matter/libs//matter.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "matter.buildbin-libdir/matter/libs//matter.so"