Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:29:32 -0400 (Wed, 17 Oct 2018).
Package 839/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
matter 1.6.0 Kylie A. Bemis
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: matter |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL matter |
StartedAt: 2018-10-15 18:00:44 -0400 (Mon, 15 Oct 2018) |
EndedAt: 2018-10-15 18:01:13 -0400 (Mon, 15 Oct 2018) |
EllapsedTime: 28.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL matter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘matter’ ... ** libs g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c bsearch.cpp -o bsearch.o bsearch.cpp: In function ‘size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = const char*; size_t = long unsigned int; SEXP = SEXPREC*]’: bsearch.cpp:51:36: warning: ‘result’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if ( mid == right && result > 0 ) ^ bsearch.cpp: In function ‘size_t binary_search(T, SEXP, size_t, size_t, double, int, int, bool) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’: bsearch.cpp:133:26: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if ( mid == right && diff > 0 ) ^ g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.cpp -o init.o g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c matter.cpp -o matter.o matter.cpp: In member function ‘void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = double; index_t = long int; size_t = long unsigned int]’: matter.cpp:3039:25: warning: ‘y’ may be used uninitialized in this function [-Wmaybe-uninitialized] add<T,T>(x, y, i, atm, 0, count, skip); ^ matter.cpp: In member function ‘void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = int; index_t = long int; size_t = long unsigned int]’: matter.cpp:3039:25: warning: ‘y’ may be used uninitialized in this function [-Wmaybe-uninitialized] matter.cpp: In member function ‘void Ops::do_ops(T*, Atoms*, index_t, index_t, size_t) [with T = unsigned char; index_t = long int; size_t = long unsigned int]’: matter.cpp:3039:25: warning: ‘y’ may be used uninitialized in this function [-Wmaybe-uninitialized] matter.cpp: In function ‘double var(MatterIterator<T>&, bool) [with T = double]’: matter.cpp:3713:17: warning: ‘s_new’ may be used uninitialized in this function [-Wmaybe-uninitialized] s_new = s_old + (*x - m_old) * (*x - m_new); ^ matter.cpp:3712:17: warning: ‘m_new’ may be used uninitialized in this function [-Wmaybe-uninitialized] m_new = m_old + (*x - m_old) / n; ^ g++ -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o g++ -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o matter.so bsearch.o init.o matter.o utils.o -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.7-bioc/R/library/matter/libs ** R ** data ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘apply’ in package ‘matter’ Creating a new generic function for ‘scale’ in package ‘matter’ Creating a new generic function for ‘biglm’ in package ‘matter’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (matter)