Package: OperaMate

Version: 1.12.0

Command: chmod a+r OperaMate -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OperaMate

StartedAt: 2018-10-16 22:45:16 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 22:46:13 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 56.9 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   chmod a+r OperaMate -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OperaMate
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* checking for file 'OperaMate/DESCRIPTION' ... OK
* preparing 'OperaMate':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: Package 'OperaMate' is deprecated and will be removed from Bioconductor
  version 3.7
[10-16-2018 22:45:33]
 OperaMate Data Processing & Analysis
********************************************************
Loading data ...
Data normalization ...
Data visualization ...
Quality control ...
Hit detection ...
Annotation ... 
Hit analysis ...
Error in if (!sort_by_structure) { : argument is of length zero
Warning in cellSigAnalysis(cell, genemap, organism, file = file.path(outpath,  :
  Function gProfile failed.

Error: processing vignette 'OperaMate-vignette.Rnw' failed with diagnostics:
 chunk 4 (label = run_pipeline) 
Error in log10(chart[, "p.value"]) : 
  non-numeric argument to mathematical function
Execution halted