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BUILD report for OperaMate on merida2

This page was generated on 2018-10-17 08:54:55 -0400 (Wed, 17 Oct 2018).

Package 1033/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OperaMate 1.12.0
Chenglin Liu
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/OperaMate
Branch: RELEASE_3_7
Last Commit: 8daf9b6
Last Changed Date: 2018-04-30 10:35:37 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: OperaMate
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OperaMate
StartedAt: 2018-10-16 17:54:22 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 17:55:34 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 72.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OperaMate
###
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* checking for file ‘OperaMate/DESCRIPTION’ ... OK
* preparing ‘OperaMate’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: Package 'OperaMate' is deprecated and will be removed from Bioconductor
  version 3.7
[10-16-2018 17:54:31]
 OperaMate Data Processing & Analysis
********************************************************
Loading data ...
Data normalization ...
Data visualization ...
Quality control ...
Hit detection ...
Annotation ... 
Hit analysis ...
Error in if (!sort_by_structure) { : argument is of length zero
Warning in cellSigAnalysis(cell, genemap, organism, file = file.path(outpath,  :
  Function gProfile failed.

Error: processing vignette 'OperaMate-vignette.Rnw' failed with diagnostics:
 chunk 4 (label = run_pipeline) 
Error in log10(chart[, "p.value"]) : 
  non-numeric argument to mathematical function
Execution halted