Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:53:39 -0400 (Wed, 17 Oct 2018).
Package 1112/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
polyester 1.16.0 Jack Fu
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: polyester |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:polyester.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings polyester_1.16.0.tar.gz |
StartedAt: 2018-10-16 23:18:09 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 23:20:06 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 117.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: polyester.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:polyester.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings polyester_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/polyester.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘polyester/DESCRIPTION’ ... OK * this is package ‘polyester’ version ‘1.16.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘polyester’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘zlibbioc’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE add_platform_error: no visible binding for global variable ‘model1’ add_platform_error: no visible binding for global variable ‘model2’ add_platform_error: no visible binding for global variable ‘model4’ add_platform_error: no visible binding for global variable ‘model5’ add_platform_error: no visible binding for global variable ‘model3’ add_platform_error: no visible binding for global variable ‘model6’ add_platform_error: no visible binding for global variable ‘model7’ generate_fragments: no visible binding for global variable ‘empirical_density’ generate_fragments: no visible binding for global variable ‘rnaf’ generate_fragments: no visible binding for global variable ‘cdnaf’ Undefined global functions or variables: cdnaf empirical_density model1 model2 model3 model4 model5 model6 model7 rnaf * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed add_gc_bias 12.730 0.130 12.930 create_read_numbers 7.689 0.282 8.076 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.7-bioc/meat/polyester.Rcheck/00check.log’ for details.
polyester.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL polyester ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘polyester’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (polyester)
polyester.Rcheck/polyester-Ex.timings
name | user | system | elapsed | |
NB | 0.002 | 0.001 | 0.002 | |
add_error | 0.152 | 0.019 | 0.173 | |
add_gc_bias | 12.73 | 0.13 | 12.93 | |
add_platform_error | 0.332 | 0.026 | 0.364 | |
count_transcripts | 0.031 | 0.009 | 0.039 | |
create_read_numbers | 7.689 | 0.282 | 8.076 | |
fpkm_to_counts | 0.065 | 0.004 | 0.069 | |
generate_fragments | 0.291 | 0.015 | 0.317 | |
getAttributeField | 1.690 | 0.161 | 1.859 | |
get_params | 0.063 | 0.005 | 0.070 | |
get_reads | 0.155 | 0.006 | 0.163 | |
reverse_complement | 0.149 | 0.006 | 0.156 | |
seq_gtf | 0.002 | 0.000 | 0.002 | |
simulate_experiment | 0.000 | 0.000 | 0.001 | |
simulate_experiment_countmat | 0.001 | 0.000 | 0.001 | |
simulate_experiment_empirical | 0.002 | 0.001 | 0.003 | |
write_reads | 0.148 | 0.009 | 0.161 | |