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CHECK report for enrichplot on tokay2

This page was generated on 2018-10-17 08:45:17 -0400 (Wed, 17 Oct 2018).

Package 448/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichplot 1.0.2
Guangchuang Yu
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/enrichplot
Branch: RELEASE_3_7
Last Commit: ba7726f
Last Changed Date: 2018-05-29 04:38:58 -0400 (Tue, 29 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: enrichplot
Version: 1.0.2
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings enrichplot_1.0.2.tar.gz
StartedAt: 2018-10-17 01:49:10 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:52:30 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 200.3 seconds
RetCode: 0
Status:  OK  
CheckDir: enrichplot.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings enrichplot_1.0.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/enrichplot.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'enrichplot/DESCRIPTION' ... OK
* this is package 'enrichplot' version '1.0.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enrichplot' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

enrichplot.Rcheck/00install.out

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/enrichplot_1.0.2.tar.gz && rm -rf enrichplot.buildbin-libdir && mkdir enrichplot.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=enrichplot.buildbin-libdir enrichplot_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL enrichplot_1.0.2.zip && rm enrichplot_1.0.2.tar.gz enrichplot_1.0.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 21003  100 21003    0     0   340k      0 --:--:-- --:--:-- --:--:--  379k

install for i386

* installing *source* package 'enrichplot' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'enrichplot'
    finding HTML links ... done
    barplot.enrichResult                    html  
    cnetplot                                html  
    color_palette                           html  
    dotplot                                 html  
    emapplot                                html  
    fortify.enrichResult                    html  
    goplot                                  html  
    gsInfo                                  html  
    gseaplot                                html  
    heatplot                                html  
    list2graph                              html  
    ridgeplot                               html  
    upsetplot-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'enrichplot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'enrichplot' as enrichplot_1.0.2.zip
* DONE (enrichplot)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'enrichplot' successfully unpacked and MD5 sums checked
In R CMD INSTALL

Tests output


Example timings

enrichplot.Rcheck/examples_i386/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult2.130.112.24
cnetplot1.650.132.00
color_palette0.020.000.01
dotplot1.060.041.11
emapplot2.130.002.13
gseaplot4.980.025.00
heatplot1.310.031.35
ridgeplot4.020.064.08
upsetplot-methods1.940.011.95

enrichplot.Rcheck/examples_x64/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult2.150.122.28
cnetplot1.910.001.91
color_palette000
dotplot1.560.001.56
emapplot2.910.022.92
gseaplot4.780.074.86
heatplot1.450.041.48
ridgeplot3.500.043.55
upsetplot-methods2.100.052.14