Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:40:35 -0400 (Wed, 17 Oct 2018).
Package 433/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
edge 2.12.2 John D. Storey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: edge |
Version: 2.12.2 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/edge_2.12.2.tar.gz && rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.12.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL edge_2.12.2.zip && rm edge_2.12.2.tar.gz edge_2.12.2.zip |
StartedAt: 2018-10-16 19:15:05 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 19:17:09 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 124.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/edge_2.12.2.tar.gz && rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.12.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL edge_2.12.2.zip && rm edge_2.12.2.tar.gz edge_2.12.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 658k 100 658k 0 0 9.8M 0 --:--:-- --:--:-- --:--:-- 10.9M install for i386 * installing *source* package 'edge' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c edge-init.c -o edge-init.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c edgeKLODP.c -o edgeKLODP.o edgeKLODP.c: In function 'odpScoreCluster': edgeKLODP.c:11:19: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized] double *first, *middle; ^ C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/edge.buildbin-libdir/edge/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'edge' finding HTML links ... done apply_jackstraw html finding level-2 HTML links ... done apply_qvalue html apply_snm html apply_sva html betaCoef html build_models html build_study html deFit-class html deSet-class html deSet html edge html endotoxin html fitFull html fitNull html fit_models html fullMatrix html fullModel html gibson html individual html kidney html kl_clust html lrt html nullMatrix html nullModel html odp html qvalueObj html resFull html resNull html sType html show html summary html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'edge' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c edge-init.c -o edge-init.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c edgeKLODP.c -o edgeKLODP.o edgeKLODP.c: In function 'odpScoreCluster': edgeKLODP.c:11:19: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized] double *first, *middle; ^ C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/edge.buildbin-libdir/edge/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'edge' as edge_2.12.2.zip * DONE (edge) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'edge' successfully unpacked and MD5 sums checked In R CMD INSTALL