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BUILD BIN report for edge on tokay2

This page was generated on 2018-10-17 08:40:35 -0400 (Wed, 17 Oct 2018).

Package 433/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
edge 2.12.2
John D. Storey , Andrew J. Bass
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/edge
Branch: RELEASE_3_7
Last Commit: dfdcbff
Last Changed Date: 2018-08-30 08:49:43 -0400 (Thu, 30 Aug 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: edge
Version: 2.12.2
Command: rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.12.2.tar.gz
StartedAt: 2018-10-17 06:17:08 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:17:38 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:  OK  
PackageFile: edge_2.12.2.zip
PackageFileSize: 1.543 MiB

Command output

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### Running command:
###
###   rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.12.2.tar.gz
###
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install for i386

* installing *source* package 'edge' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c edge-init.c -o edge-init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c edgeKLODP.c -o edgeKLODP.o
edgeKLODP.c: In function 'odpScoreCluster':
edgeKLODP.c:11:19: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
   double *first, *middle;
                   ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/edge.buildbin-libdir/edge/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'edge'
    finding HTML links ... done
    apply_jackstraw                         html  
    finding level-2 HTML links ... done

    apply_qvalue                            html  
    apply_snm                               html  
    apply_sva                               html  
    betaCoef                                html  
    build_models                            html  
    build_study                             html  
    deFit-class                             html  
    deSet-class                             html  
    deSet                                   html  
    edge                                    html  
    endotoxin                               html  
    fitFull                                 html  
    fitNull                                 html  
    fit_models                              html  
    fullMatrix                              html  
    fullModel                               html  
    gibson                                  html  
    individual                              html  
    kidney                                  html  
    kl_clust                                html  
    lrt                                     html  
    nullMatrix                              html  
    nullModel                               html  
    odp                                     html  
    qvalueObj                               html  
    resFull                                 html  
    resNull                                 html  
    sType                                   html  
    show                                    html  
    summary                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'edge' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c edge-init.c -o edge-init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c edgeKLODP.c -o edgeKLODP.o
edgeKLODP.c: In function 'odpScoreCluster':
edgeKLODP.c:11:19: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
   double *first, *middle;
                   ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/edge.buildbin-libdir/edge/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'edge' as edge_2.12.2.zip
* DONE (edge)
In R CMD INSTALL
In R CMD INSTALL