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BUILD BIN report for cytofkit on tokay2

This page was generated on 2018-06-25 10:18:44 -0400 (Mon, 25 Jun 2018).

Package 338/1560HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cytofkit 1.12.0
Jinmiao Chen , Matthew Myint
Snapshot Date: 2018-06-24 16:46:06 -0400 (Sun, 24 Jun 2018)
URL: https://git.bioconductor.org/packages/cytofkit
Branch: RELEASE_3_7
Last Commit: 7073090
Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: cytofkit
Version: 1.12.0
Command: rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cytofkit.buildbin-libdir cytofkit_1.12.0.tar.gz
StartedAt: 2018-06-25 06:19:52 -0400 (Mon, 25 Jun 2018)
EndedAt: 2018-06-25 06:20:45 -0400 (Mon, 25 Jun 2018)
EllapsedTime: 53.2 seconds
RetCode: 0
Status:  OK  
PackageFile: cytofkit_1.12.0.zip
PackageFileSize: 5.027 MiB

Command output

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### Running command:
###
###   rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cytofkit.buildbin-libdir cytofkit_1.12.0.tar.gz
###
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install for i386

* installing *source* package 'cytofkit' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o cytofkit.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/cytofkit.buildbin-libdir/cytofkit/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cytofkit'
    finding HTML links ... done
    ClusterX                                html  
    DensVM                                  html  
    Rphenograph                             html  
    cytof_addToFCS                          html  
    cytof_cluster                           html  
    cytof_clusterMtrx                       html  
    cytof_clusterPlot                       html  
    cytof_clusterStat                       html  
    cytof_colorPlot                         html  
    cytof_dimReduction                      html  
    finding level-2 HTML links ... done

    cytof_exprsExtract                      html  
    cytof_exprsMerge                        html  
    cytof_heatmap                           html  
    cytof_progression                       html  
    cytof_progressionPlot                   html  
    cytof_writeResults                      html  
    cytofkit-package                        html  
    cytofkit                                html  
    cytofkitNews                            html  
    cytofkitShinyAPP                        html  
    cytofkit_GUI                            html  
    fixedLogicleParameters_GUI              html  
    getParameters_GUI                       html  
    launchShinyAPP_GUI                      html  
    spectral1                               html  
    spectral2                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'cytofkit' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o cytofkit.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/cytofkit.buildbin-libdir/cytofkit/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cytofkit' as cytofkit_1.12.0.zip
* DONE (cytofkit)
In R CMD INSTALL
In R CMD INSTALL