Jun Woo
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ccfindR |
| Branch: RELEASE_3_7 |
| Last Commit: b9f8f06 |
| Last Changed Date: 2018-04-30 10:35:51 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:45:47 -0400 (Wed, 17 Oct 2018).
| Package 196/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ccfindR 1.0.0 Jun Woo
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ccfindR |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ccfindR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ccfindR_1.0.0.tar.gz |
| StartedAt: 2018-10-17 00:57:27 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:03:33 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 365.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ccfindR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ccfindR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ccfindR_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ccfindR.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccfindR/DESCRIPTION' ... OK
* this is package 'ccfindR' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ccfindR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plot_tree 11.33 0.10 11.44
cluster_id 10.27 0.00 10.27
vb_factorize 9.69 0.00 9.69
build_tree 9.53 0.08 9.61
simulate_whx 9.51 0.00 9.51
rename_tips 9.29 0.03 9.33
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
build_tree 17.01 0.00 17.02
cluster_id 13.77 0.00 13.76
plot_tree 11.07 0.05 11.12
rename_tips 9.61 0.00 9.61
simulate_whx 9.61 0.00 9.61
vb_factorize 8.86 0.00 8.86
factorize 5.27 0.04 5.31
colData-scNMFSet-method 0.19 0.02 11.75
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ccfindR.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ccfindR_1.0.0.tar.gz && rm -rf ccfindR.buildbin-libdir && mkdir ccfindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccfindR.buildbin-libdir ccfindR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ccfindR_1.0.0.zip && rm ccfindR_1.0.0.tar.gz ccfindR_1.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 320k 100 320k 0 0 5054k 0 --:--:-- --:--:-- --:--:-- 5715k
install for i386
* installing *source* package 'ccfindR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ccfindR'
finding HTML links ... done
basis-scNMFSet-method html
basis-set-scNMFSet-method html
basis-set html
basis html
build_tree html
cell_map html
cluster_id html
coeff-scNMFSet-method html
coeff-set-scNMFSet-method html
coeff-set html
coeff html
colData-scNMFSet-method html
colData-set-scNMFSet-ANY-method html
counts-scNMFSet-method html
counts-set-scNMFSet-method html
factorize html
filter_cells html
filter_genes html
gene_map html
measure-scNMFSet-method html
measure-set-scNMFSet-method html
measure-set html
measure html
meta_genes html
normalize_count html
plot_genes html
plot_tree html
finding level-2 HTML links ... done
ranks-scNMFSet-method html
ranks-set-scNMFSet-method html
ranks-set html
ranks html
read_10x html
remove_zeros html
rename_tips html
rowData-scNMFSet-method html
rowData-set-scNMFSet-method html
scNMFSet-class html
scNMFSet html
show-scNMFSet-method html
simulate_data html
simulate_whx html
subset-methods html
vb_factorize html
visualize_clusters html
write_10x html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ccfindR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ccfindR' as ccfindR_1.0.0.zip
* DONE (ccfindR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ccfindR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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ccfindR.Rcheck/examples_i386/ccfindR-Ex.timings
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ccfindR.Rcheck/examples_x64/ccfindR-Ex.timings
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