Multiple platform build/check report for BioC 3.7 - INSTALL report for SummarizedExperiment on tokay2

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SummarizedExperiment_1.10.1.tar.gz && rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SummarizedExperiment_1.10.1.zip && rm SummarizedExperiment_1.10.1.tar.gz SummarizedExperiment_1.10.1.zip
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install for i386

* installing *source* package 'SummarizedExperiment' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SummarizedExperiment'
    finding HTML links ... done
    Assays-class                            html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/Assays-class.Rd:118: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
    RangedSummarizedExperiment-class        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:120: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:123: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:223: file link 'findOverlaps' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:224: file link 'nearest' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:268: file link 'shift' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:269: file link 'isDisjoint' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
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    SummarizedExperiment-class              html  
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/SummarizedExperiment-class.Rd:224: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/SummarizedExperiment-class.Rd:416: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/SummarizedExperiment-class.Rd:416: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/SummarizedExperiment-class.Rd:419: file link 'metadata' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/SummarizedExperiment-class.Rd:420: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/SummarizedExperiment-class.Rd:424: file link 'loadHDF5SummarizedExperiment' in package 'HDF5Array' does not exist and so has been treated as a topic
    coverage-methods                        html  
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/coverage-methods.Rd:34: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/coverage-methods.Rd:42: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
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    findOverlaps-methods                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/findOverlaps-methods.Rd:43: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/findOverlaps-methods.Rd:47: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/findOverlaps-methods.Rd:55: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
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    inter-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/inter-range-methods.Rd:30: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
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    intra-range-methods                     html  
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    makeSummarizedExperimentFromDataFrame   html  
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    makeSummarizedExperimentFromExpressionSet
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Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:70: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:79: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:81: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromLoom        html  
    nearest-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:66: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:79: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:79: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:88: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:90: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:90: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:95: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:103: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:105: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpczHhh9/R.INSTALL1c2c6e12922/SummarizedExperiment/man/nearest-methods.Rd:106: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    readKallisto                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SummarizedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedExperiment' as SummarizedExperiment_1.10.1.zip
* DONE (SummarizedExperiment)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SummarizedExperiment' successfully unpacked and MD5 sums checked
In R CMD INSTALL
INSTALL report for SummarizedExperiment on tokay2

Summary

Command output
