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BUILD BIN report for SummarizedExperiment on tokay2

This page was generated on 2018-10-17 08:40:37 -0400 (Wed, 17 Oct 2018).

Package 1446/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SummarizedExperiment 1.10.1
Bioconductor Package Maintainer
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/SummarizedExperiment
Branch: RELEASE_3_7
Last Commit: 7ad2e99
Last Changed Date: 2018-05-09 21:23:02 -0400 (Wed, 09 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: SummarizedExperiment
Version: 1.10.1
Command: rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.10.1.tar.gz
StartedAt: 2018-10-17 07:02:59 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 07:03:36 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 37.0 seconds
RetCode: 0
Status:  OK  
PackageFile: SummarizedExperiment_1.10.1.zip
PackageFileSize: 2.441 MiB

Command output

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### Running command:
###
###   rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.10.1.tar.gz
###
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install for i386

* installing *source* package 'SummarizedExperiment' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SummarizedExperiment'
    finding HTML links ... done
    Assays-class                            html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/Assays-class.Rd:118: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
    RangedSummarizedExperiment-class        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:120: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:123: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:126: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:127: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:130: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:130: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:155: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:156: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:220: file link 'shift' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:221: file link 'isDisjoint' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:222: file link 'coverage' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:223: file link 'findOverlaps' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:224: file link 'nearest' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:268: file link 'shift' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:269: file link 'isDisjoint' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:270: file link 'coverage' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:271: file link 'findOverlaps' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:272: file link 'nearest' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:275: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    SummarizedExperiment-class              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:138: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:224: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:416: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:416: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:417: file link 'Annotated' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:419: file link 'metadata' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:420: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/SummarizedExperiment-class.Rd:424: file link 'loadHDF5SummarizedExperiment' in package 'HDF5Array' does not exist and so has been treated as a topic
    coverage-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:26: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:34: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:34: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:40: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:42: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:42: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:47: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:55: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:57: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/coverage-methods.Rd:58: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    findOverlaps-methods                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:43: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:47: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:55: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:55: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:63: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:65: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:65: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:70: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:78: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:80: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/findOverlaps-methods.Rd:81: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    inter-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:30: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:38: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:38: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:48: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:50: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:50: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:55: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:63: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:65: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/inter-range-methods.Rd:66: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    intra-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:57: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:61: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:65: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:69: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:73: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:81: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:81: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:91: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:93: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:93: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:101: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:103: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/intra-range-methods.Rd:104: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromDataFrame   html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromDataFrame.Rd:31: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromExpressionSet
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:20: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:39: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:42: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:45: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:45: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:47: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:64: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:70: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:79: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:81: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromLoom        html  
    nearest-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:66: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:79: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:79: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:88: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:90: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:90: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:95: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:103: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:105: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpMPFM0T/R.INSTALL21402e8a20fc/SummarizedExperiment/man/nearest-methods.Rd:106: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    readKallisto                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SummarizedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedExperiment' as SummarizedExperiment_1.10.1.zip
* DONE (SummarizedExperiment)
In R CMD INSTALL
In R CMD INSTALL