Package: IMPCdata

Version: 1.16.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.16.0.tar.gz

StartedAt: 2018-10-16 22:04:50 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 22:07:01 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 130.1 seconds

RetCode: 0

Status:  OK

CheckDir: IMPCdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.16.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/IMPCdata.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
getIMPCDataset  1.034  0.035  12.770
getPhenCenters  0.474  0.029  15.238
getStrains      0.291  0.019  10.870
printStrains    0.286  0.019   7.687
getAlleles      0.246  0.019   5.744
getParameters   0.228  0.014   5.427
printGenes      0.223  0.013   5.249
getGenes        0.219  0.013   5.228
getProcedures   0.218  0.014   6.262
printAlleles    0.215  0.013   5.088
printParameters 0.215  0.013   5.596
printProcedures 0.207  0.013   5.552
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL IMPCdata
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘IMPCdata’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IMPCdata)

name	user	system	elapsed
getAlleles	0.246	0.019	5.744
getGenes	0.219	0.013	5.228
getIMPCDataset	1.034	0.035	12.770
getIMPCTable	0.149	0.015	4.220
getName	0.037	0.002	1.014
getParameters	0.228	0.014	5.427
getPhenCenters	0.474	0.029	15.238
getPipelines	0.187	0.011	4.669
getProcedures	0.218	0.014	6.262
getStrains	0.291	0.019	10.870
getZygosities	0.044	0.003	0.853
printAlleles	0.215	0.013	5.088
printGenes	0.223	0.013	5.249
printParameters	0.215	0.013	5.596
printPhenCenters	0.072	0.004	3.302
printPipelines	0.183	0.011	4.502
printProcedures	0.207	0.013	5.552
printStrains	0.286	0.019	7.687