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This page was generated on 2018-10-17 08:32:53 -0400 (Wed, 17 Oct 2018).
Package 673/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Harshlight 1.52.0 Maurizio Pellegrino
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Harshlight |
Version: 1.52.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Harshlight_1.52.0.tar.gz && rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harshlight.buildbin-libdir Harshlight_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Harshlight_1.52.0.zip && rm Harshlight_1.52.0.tar.gz Harshlight_1.52.0.zip |
StartedAt: 2018-10-16 19:42:55 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 19:43:28 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 33.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Harshlight_1.52.0.tar.gz && rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harshlight.buildbin-libdir Harshlight_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Harshlight_1.52.0.zip && rm Harshlight_1.52.0.tar.gz Harshlight_1.52.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 101k 100 101k 0 0 1828k 0 --:--:-- --:--:-- --:--:-- 2076k install for i386 * installing *source* package 'Harshlight' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c Harshlight.c -o Harshlight.o Harshlight.c: In function 'extended_defects': Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable] int num_points, *p_num_points; //number of points inside the median kernel ^ Harshlight.c: In function 'image_dilation': Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable] double cell_value; ^ Harshlight.c: In function 'norm': Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable] double *sorted; double *sorted2; ^ Harshlight.c: In function 'report_overall_header': Harshlight.c:1471:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); ^ Harshlight.c:1474:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); ^ Harshlight.c: In function 'chip_summary': Harshlight.c:1532:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ^ Harshlight.c:1542:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); ^ Harshlight.c:1543:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); ^ Harshlight.c: In function 'extended_stop': Harshlight.c:1555:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ^ C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Harshlight.buildbin-libdir/Harshlight/libs/i386 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Harshlight' finding HTML links ... done HarshComp html HarshExt html Harshlight html sim html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'Harshlight' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c Harshlight.c -o Harshlight.o Harshlight.c: In function 'extended_defects': Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable] int num_points, *p_num_points; //number of points inside the median kernel ^ Harshlight.c: In function 'image_dilation': Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable] double cell_value; ^ Harshlight.c: In function 'norm': Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable] double *sorted; double *sorted2; ^ Harshlight.c: In function 'report_overall_header': Harshlight.c:1471:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); ^ Harshlight.c:1474:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); ^ Harshlight.c: In function 'chip_summary': Harshlight.c:1532:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ^ Harshlight.c:1542:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); ^ Harshlight.c:1543:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); ^ Harshlight.c: In function 'extended_stop': Harshlight.c:1555:3: warning: unknown conversion type character ')' in format [-Wformat=] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ^ C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Harshlight.buildbin-libdir/Harshlight/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Harshlight' as Harshlight_1.52.0.zip * DONE (Harshlight) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'Harshlight' successfully unpacked and MD5 sums checked In R CMD INSTALL