Ludwig Geistlinger
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/EnrichmentBrowser |
| Branch: RELEASE_3_7 |
| Last Commit: 96bfeea |
| Last Changed Date: 2018-08-26 17:23:02 -0400 (Sun, 26 Aug 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:15 -0400 (Wed, 17 Oct 2018).
| Package 447/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EnrichmentBrowser 2.10.11 Ludwig Geistlinger
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: EnrichmentBrowser |
| Version: 2.10.11 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.10.11.tar.gz |
| StartedAt: 2018-10-17 01:48:34 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:56:26 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 472.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EnrichmentBrowser.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.10.11.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/EnrichmentBrowser.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK
* this is package 'EnrichmentBrowser' version '2.10.11'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnrichmentBrowser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ebrowser 52.21 13.75 66.52
compileGRN 9.17 3.07 12.27
getGenesets 11.00 0.12 15.59
eaBrowse 8.17 2.11 11.24
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ebrowser 63.69 4.49 68.25
getGenesets 18.59 0.09 24.50
compileGRN 13.11 1.55 14.67
eaBrowse 11.91 0.92 13.00
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/EnrichmentBrowser.Rcheck/00check.log'
for details.
EnrichmentBrowser.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/EnrichmentBrowser_2.10.11.tar.gz && rm -rf EnrichmentBrowser.buildbin-libdir && mkdir EnrichmentBrowser.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichmentBrowser.buildbin-libdir EnrichmentBrowser_2.10.11.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL EnrichmentBrowser_2.10.11.zip && rm EnrichmentBrowser_2.10.11.tar.gz EnrichmentBrowser_2.10.11.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 681k 100 681k 0 0 9.7M 0 --:--:-- --:--:-- --:--:-- 10.9M
install for i386
* installing *source* package 'EnrichmentBrowser' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'EnrichmentBrowser'
finding HTML links ... done
combResults html
compileGRN html
finding level-2 HTML links ... done
configEBrowser html
deAna html
downloadPathways html
eaBrowse html
ebrowser html
getGenesets html
ggeaGraph html
idMap html
isAvailable html
makeExampleData html
nbea html
normalize html
plots html
probe2gene html
readSE html
sbea html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'EnrichmentBrowser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnrichmentBrowser' as EnrichmentBrowser_2.10.11.zip
* DONE (EnrichmentBrowser)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'EnrichmentBrowser' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
EnrichmentBrowser.Rcheck/examples_i386/EnrichmentBrowser-Ex.timings
|
EnrichmentBrowser.Rcheck/examples_x64/EnrichmentBrowser-Ex.timings
|