Package: ChAMPdata

Version: 2.10.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_2.10.0.tar.gz

StartedAt: 2018-04-12 09:47:09 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 09:51:00 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 231.3 seconds

RetCode: 0

Status:  OK

CheckDir: ChAMPdata.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ChAMPdata_2.10.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘2.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 712.9Mb
  sub-directories of 1Mb or more:
    data     589.2Mb
    extdata  123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in nrow(x@elementMetadata) : 
    no slot of name "elementMetadata" for this object of class "RGChannelSetExtended"
  Calls: <Anonymous> ... check_one -> lapply -> FUN -> length -> length -> nrow
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
ChAMPdata-package 33.996  0.424  34.452
testDataSet       10.816  0.160  10.983
AnnoEPIC           6.264  0.032   6.298
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.

* installing *source* package ‘ChAMPdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChAMPdata)

name	user	system	elapsed
Anno450K	3.380	0.032	3.414
AnnoEPIC	6.264	0.032	6.298
CellTypeMeans27K	0.004	0.000	0.002
CellTypeMeans450K	0.004	0.000	0.002
ChAMPdata-package	33.996	0.424	34.452
ControlProbes450K	0.000	0.000	0.001
ControlProbesEPIC	0.000	0.000	0.001
EPIC.manifest.hg38	4.152	0.064	4.218
EPIC.manifest.pop.hg38	0.860	0.040	0.901
EPICSimData	2.840	0.020	2.863
MatchGeneName	0.024	0.000	0.024
PathwayList	0.616	0.004	0.618
bloodCtl	0.000	0.000	0.002
hm450.manifest.hg38	2.564	0.004	2.567
hm450.manifest.pop.hg38	1.208	0.016	1.223
hprdAsigH	3.560	0.212	3.777
illumina450Gr	1.732	0.008	1.740
illuminaEPICGr	2.448	0.008	2.458
multi.hit	0.792	0.000	0.793
probe.features	0.652	0.004	0.656
probe.features.epic	1.628	0.000	1.629
probeInfoALL.epic.lv	0.676	0.004	0.680
probeInfoALL.lv	0.516	0.004	0.518
snp.hit	0.868	0.000	0.869
testDataSet	10.816	0.160	10.983