Qianxing Mo
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/iClusterPlus |
| Branch: RELEASE_3_6 |
| Last Commit: 44b9bd3 |
| Last Changed Date: 2017-10-30 12:40:10 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:43 -0400 (Thu, 12 Apr 2018).
| Package 677/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| iClusterPlus 1.14.0 Qianxing Mo
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: iClusterPlus |
| Version: 1.14.0 |
| Command: rm -rf iClusterPlus.buildbin-libdir && mkdir iClusterPlus.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/iClusterPlus_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=iClusterPlus.buildbin-libdir --merge-multiarch iClusterPlus_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL iClusterPlus_1.14.0.zip && rm iClusterPlus_1.14.0.tar.gz iClusterPlus_1.14.0.zip |
| StartedAt: 2018-04-11 18:10:27 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:12:03 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 96.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf iClusterPlus.buildbin-libdir && mkdir iClusterPlus.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/iClusterPlus_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=iClusterPlus.buildbin-libdir --merge-multiarch iClusterPlus_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL iClusterPlus_1.14.0.zip && rm iClusterPlus_1.14.0.tar.gz iClusterPlus_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 19.8M 100 19.8M 0 0 18.4M 0 0:00:01 0:00:01 --:--:-- 19.5M
install for i386
* installing *source* package 'iClusterPlus' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c iClusterPlus.c -o iClusterPlus.o
iClusterPlus.c: In function 'iClusterCore':
iClusterPlus.c:1098:60: warning: unused variable 'tempm3' [-Wunused-variable]
double *btp,*btpb, *EXZt,*tempX,*tempm0,*tempm1,*tempm2,*tempm3,*BOld,*PhivecOld, *XtXdiag;
^
iClusterPlus.c:1096:18: warning: variable 'pp' set but not used [-Wunused-but-set-variable]
int i, j,kk,pk,pp,s,t;
^
C:/Rtools/mingw_32/bin/gfortran -fdefault-real-8 -ffixed-form -O3 -mtune=generic -c newGLMnet.f90 -o newGLMnet.o
C:/Rtools/mingw_32/bin/gfortran -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterPlus.o newGLMnet.o -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'iClusterPlus'
finding HTML links ... done
CNregions html
breast.chr17 html
compute.pod html
coord html
gbm html
glp html
iCluster html
iCluster2 html
iClusterPlus html
plotHeatmap html
plotRI html
plotiCluster html
simuResult html
tune.iCluster2 html
tune.iClusterPlus html
utility html
variation.hg18.v10.nov.2010 html
** building package indices
** installing vignettes
'iClusterPlus.Rnw' using 'UTF-8'
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'iClusterPlus' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c iClusterPlus.c -o iClusterPlus.o
iClusterPlus.c: In function 'iClusterCore':
iClusterPlus.c:1098:60: warning: unused variable 'tempm3' [-Wunused-variable]
double *btp,*btpb, *EXZt,*tempX,*tempm0,*tempm1,*tempm2,*tempm3,*BOld,*PhivecOld, *XtXdiag;
^
iClusterPlus.c:1096:18: warning: variable 'pp' set but not used [-Wunused-but-set-variable]
int i, j,kk,pk,pp,s,t;
^
C:/Rtools/mingw_64/bin/gfortran -fdefault-real-8 -ffixed-form -O2 -mtune=generic -c newGLMnet.f90 -o newGLMnet.o
C:/Rtools/mingw_64/bin/gfortran -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterPlus.o newGLMnet.o -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iClusterPlus' as iClusterPlus_1.14.0.zip
* DONE (iClusterPlus)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'iClusterPlus' successfully unpacked and MD5 sums checked
In R CMD INSTALL