Aaron Lun
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/InteractionSet |
| Branch: RELEASE_3_6 |
| Last Commit: 22b7b2c |
| Last Changed Date: 2017-10-30 12:41:16 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:01 -0400 (Thu, 12 Apr 2018).
| Package 700/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| InteractionSet 1.6.0 Aaron Lun
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: InteractionSet |
| Version: 1.6.0 |
| Command: rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/InteractionSet_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=InteractionSet.buildbin-libdir --merge-multiarch InteractionSet_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL InteractionSet_1.6.0.zip && rm InteractionSet_1.6.0.tar.gz InteractionSet_1.6.0.zip |
| StartedAt: 2018-04-11 18:41:09 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:42:27 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 77.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/InteractionSet_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=InteractionSet.buildbin-libdir --merge-multiarch InteractionSet_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL InteractionSet_1.6.0.zip && rm InteractionSet_1.6.0.tar.gz InteractionSet_1.6.0.zip
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100 81794 100 81794 0 0 75822 0 0:00:01 0:00:01 --:--:-- 76087
install for i386
* installing *source* package 'InteractionSet' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c box_bounds.cpp -o box_bounds.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c overlaps.cpp -o overlaps.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o InteractionSet.dll tmp.def box_bounds.o init.o overlaps.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'InteractionSet'
finding HTML links ... done
ContactMatrix-accessors html
finding level-2 HTML links ... done
ContactMatrix-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/ContactMatrix-class.Rd:42: missing file link 'Annotated'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/ContactMatrix-class.Rd:51: missing file link 'Annotated'
ContactMatrix-distances html
ContactMatrix-overlaps html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/ContactMatrix-overlaps.Rd:33: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/ContactMatrix-overlaps.Rd:37: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/ContactMatrix-overlaps.Rd:100: missing file link 'findOverlaps'
ContactMatrix-sorting html
ContactMatrix-subset html
GInteractions-class html
InteractionSet-class html
boundingBox html
conversion html
distances html
granges-methods html
interaction-accessors html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/interaction-accessors.Rd:170: missing file link 'mcols'
interaction-bind html
interaction-compare html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/interaction-compare.Rd:216: missing file link 'pcompare'
interaction-subset html
linearize html
linkOverlaps html
overlaps html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/overlaps.Rd:138: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/overlaps.Rd:142: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/overlaps.Rd:171: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpYbeT9Y/R.INSTALL17686c1210b/InteractionSet/man/overlaps.Rd:284: missing file link 'findOverlaps'
pairs html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'InteractionSet' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c box_bounds.cpp -o box_bounds.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c overlaps.cpp -o overlaps.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o InteractionSet.dll tmp.def box_bounds.o init.o overlaps.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InteractionSet' as InteractionSet_1.6.0.zip
* DONE (InteractionSet)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'InteractionSet' successfully unpacked and MD5 sums checked
In R CMD INSTALL