Jianhong Ou
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/trackViewer |
| Branch: RELEASE_3_6 |
| Last Commit: 4310230 |
| Last Changed Date: 2018-02-12 12:16:42 -0400 (Mon, 12 Feb 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:45 -0400 (Thu, 12 Apr 2018).
| Package 1412/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| trackViewer 1.14.1 Jianhong Ou
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: trackViewer |
| Version: 1.14.1 |
| Command: rm -rf trackViewer.buildbin-libdir trackViewer.Rcheck && mkdir trackViewer.buildbin-libdir trackViewer.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.14.1.tar.gz >trackViewer.Rcheck\00install.out 2>&1 && cp trackViewer.Rcheck\00install.out trackViewer-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.14.1.tar.gz |
| StartedAt: 2018-04-12 03:38:11 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 03:47:22 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 550.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: trackViewer.Rcheck |
| Warnings: 1 |
##############################################################################
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###
### Running command:
###
### rm -rf trackViewer.buildbin-libdir trackViewer.Rcheck && mkdir trackViewer.buildbin-libdir trackViewer.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.14.1.tar.gz >trackViewer.Rcheck\00install.out 2>&1 && cp trackViewer.Rcheck\00install.out trackViewer-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.14.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/trackViewer.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'trackViewer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trackViewer' version '1.14.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'trackViewer' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/browseTracks.Rd:14: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:8: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:9: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:9: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:25: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:19: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:23: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:26: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/geneModelFromTxdb.Rd:17: missing file link 'TxDb'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/ideogramPlot.Rd:33: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importBam.Rd:15: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importData.Rd:17: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importData.Rd:21: missing file link 'RleList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importScore.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/loadIdeogram.Rd:20: missing file link 'Ranges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/loadIdeogram.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/loadIdeogram.Rd:27: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:23: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:24: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:28: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:28: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:29: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:33: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:33: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/parse2GRanges.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/plotGRanges.Rd:16: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/plotGRanges.Rd:17: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/track.rd:29: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/track.rd:31: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/viewTracks.Rd:21: missing file link 'GRanges'
See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/trackViewer.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
'filterTracks'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
trackViewer-package 17.45 0.02 17.47
viewTracks 11.05 0.01 11.06
browseTracks 10.34 0.20 10.54
geneModelFromTxdb 10.00 0.28 10.29
parseWIG 10.19 0.03 10.21
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
trackViewer-package 21.58 0.15 21.74
browseTracks 12.18 0.07 12.26
parseWIG 11.30 0.04 11.33
viewTracks 10.94 0.02 10.95
geneModelFromTxdb 9.96 0.30 10.25
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/trackViewer.Rcheck/00check.log'
for details.
trackViewer.Rcheck/00install.out
install for i386
* installing *source* package 'trackViewer' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'trackViewer'
finding HTML links ... done
GRoperator html
addArrowMark html
addGuideLine html
browseTracks html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/browseTracks.Rd:14: missing file link 'GRanges'
coverageGR html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:8: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:9: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:9: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/coverageGR.Rd:25: missing file link 'coverage'
dandelion.plot html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:19: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:19: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:23: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:26: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/dandelion.plot.Rd:26: missing file link 'GRangesList'
geneModelFromTxdb html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/geneModelFromTxdb.Rd:17: missing file link 'TxDb'
getCurTrackViewport html
ideogramPlot html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/ideogramPlot.Rd:33: missing file link 'GRangesList'
importBam html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importBam.Rd:15: missing file link 'GRanges'
importData html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importData.Rd:17: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importData.Rd:21: missing file link 'RleList'
importScore html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/importScore.Rd:19: missing file link 'GRanges'
loadIdeogram html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/loadIdeogram.Rd:20: missing file link 'Ranges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/loadIdeogram.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/loadIdeogram.Rd:27: missing file link 'GRanges'
lolliplot html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:23: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:24: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:28: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:28: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:29: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:33: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/lolliplot.Rd:33: missing file link 'GRangesList'
optimizeStyle html
parse2GRanges html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/parse2GRanges.Rd:19: missing file link 'GRanges'
parseWIG html
plotGRanges html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/plotGRanges.Rd:16: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/plotGRanges.Rd:17: missing file link 'GRanges'
pos html
track html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/track.rd:29: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/track.rd:31: missing file link 'GRanges'
trackList html
trackStyle html
trackViewer-package html
trackViewerStyle html
viewTracks html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpMZTOEz/R.INSTALL38744da04333/trackViewer/man/viewTracks.Rd:21: missing file link 'GRanges'
xscale html
yaxisStyle html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'trackViewer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.14.1.zip
* DONE (trackViewer)
In R CMD INSTALL
In R CMD INSTALL
|
trackViewer.Rcheck/tests_i386/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require("trackViewer") || stop("unable to load Package:trackViewer")
Loading required package: trackViewer
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: grid
[1] TRUE
> BiocGenerics:::testPackage("trackViewer")
RUNIT TEST PROTOCOL -- Thu Apr 12 03:47:03 2018
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
trackViewer RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
11.37 0.54 11.96
|
trackViewer.Rcheck/tests_x64/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require("trackViewer") || stop("unable to load Package:trackViewer")
Loading required package: trackViewer
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: grid
[1] TRUE
> BiocGenerics:::testPackage("trackViewer")
RUNIT TEST PROTOCOL -- Thu Apr 12 03:47:16 2018
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
trackViewer RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
12.50 0.35 12.98
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trackViewer.Rcheck/examples_i386/trackViewer-Ex.timings
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trackViewer.Rcheck/examples_x64/trackViewer-Ex.timings
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